Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | A6037_RS00850 | Genome accession | NZ_CP015425 |
| Coordinates | 198655..199848 (-) | Length | 397 a.a. |
| NCBI ID | WP_064081941.1 | Uniprot ID | - |
| Organism | [Haemophilus] ducreyi strain VAN2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 193655..204848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6037_RS00825 (A6037_00840) | lptE | 195622..196119 (+) | 498 | WP_064081937.1 | LPS assembly lipoprotein LptE | - |
| A6037_RS00830 (A6037_00845) | holA | 196125..197150 (+) | 1026 | WP_064081938.1 | DNA polymerase III subunit delta | - |
| A6037_RS00835 (A6037_00850) | yacG | 197184..197372 (-) | 189 | WP_064081939.1 | DNA gyrase inhibitor YacG | - |
| A6037_RS00840 (A6037_00855) | coaE | 197375..197992 (-) | 618 | WP_064081940.1 | dephospho-CoA kinase | - |
| A6037_RS07710 (A6037_00860) | - | 198010..198324 (-) | 315 | WP_158077649.1 | prepilin peptidase | - |
| A6037_RS07715 (A6037_00865) | - | 198386..198655 (-) | 270 | WP_078179334.1 | hypothetical protein | - |
| A6037_RS00850 (A6037_00870) | pilC | 198655..199848 (-) | 1194 | WP_064081941.1 | type II secretion system F family protein | Machinery gene |
| A6037_RS00855 (A6037_00875) | pilB | 199832..201226 (-) | 1395 | WP_064081942.1 | GspE/PulE family protein | Machinery gene |
| A6037_RS00860 (A6037_00880) | pilA | 201238..201684 (-) | 447 | WP_064081943.1 | pilin | Machinery gene |
| A6037_RS00865 (A6037_00885) | radA | 201878..203257 (+) | 1380 | WP_064081944.1 | DNA repair protein RadA | - |
| A6037_RS00870 (A6037_00890) | - | 203324..203539 (-) | 216 | WP_010945033.1 | YgjV family protein | - |
| A6037_RS00875 (A6037_00895) | - | 203661..204146 (-) | 486 | WP_064081945.1 | dihydrofolate reductase | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 45709.40 Da Isoelectric Point: 10.1709
>NTDB_id=179435 A6037_RS00850 WP_064081941.1 198655..199848(-) (pilC) [[Haemophilus] ducreyi strain VAN2]
MLKIYEFHWRAFNRFNQRQKGKSLAKSHDELEQRLLAKGYSNIHIQRDFILVRKPKSEQITQLINQLAMLLNASVPLKQS
LVMVLENVHNIKLYLWLYEIITLLEAGHTFSASLTKMNVYLTKQEIQLIKMGEQSGRLAIMLDNIAKVRTQSQKLANKVK
KIMFYPAIILAVSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLFSGIVSYFLAKKRLF
WRTLRSRLLNHMPGFQQIIKDARIIFFSQNLALMLNAHIHLDATLKAFLSEHRQDPVLHQEILSILSLLKQGYKFSEGLN
PTVFTSQVVQMMAIGEQSGNLAKMCMCISQLYQQKLDYQIDLFAQLLEPVLMLVIGIIVGTILIGIYLPIFDMGALV
MLKIYEFHWRAFNRFNQRQKGKSLAKSHDELEQRLLAKGYSNIHIQRDFILVRKPKSEQITQLINQLAMLLNASVPLKQS
LVMVLENVHNIKLYLWLYEIITLLEAGHTFSASLTKMNVYLTKQEIQLIKMGEQSGRLAIMLDNIAKVRTQSQKLANKVK
KIMFYPAIILAVSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLFSGIVSYFLAKKRLF
WRTLRSRLLNHMPGFQQIIKDARIIFFSQNLALMLNAHIHLDATLKAFLSEHRQDPVLHQEILSILSLLKQGYKFSEGLN
PTVFTSQVVQMMAIGEQSGNLAKMCMCISQLYQQKLDYQIDLFAQLLEPVLMLVIGIIVGTILIGIYLPIFDMGALV
Nucleotide
Download Length: 1194 bp
>NTDB_id=179435 A6037_RS00850 WP_064081941.1 198655..199848(-) (pilC) [[Haemophilus] ducreyi strain VAN2]
ATGCTGAAAATATATGAATTTCATTGGCGGGCTTTTAATCGTTTTAATCAACGGCAAAAAGGTAAATCTCTGGCCAAAAG
TCACGATGAATTAGAACAACGGCTATTAGCTAAAGGCTATTCAAATATCCATATTCAACGTGATTTTATTTTAGTTAGGA
AACCCAAAAGCGAACAAATCACTCAATTAATTAATCAGTTAGCTATGTTATTGAATGCCTCGGTTCCATTAAAACAATCG
CTGGTGATGGTATTAGAAAACGTACATAATATTAAATTATATTTATGGTTATATGAAATTATTACGCTGTTAGAAGCGGG
GCATACTTTTTCAGCCAGTCTCACTAAAATGAACGTTTATTTGACTAAGCAAGAAATTCAGTTAATTAAGATGGGAGAAC
AGAGTGGGCGTTTAGCCATTATGCTAGATAACATTGCAAAAGTACGTACTCAATCACAGAAATTAGCTAATAAAGTAAAG
AAAATTATGTTTTATCCGGCGATTATTTTAGCCGTATCAATTAGTGTATTAATTGGATTGTTATTATTTATTGTGCCTCA
ATTTGAAGATCTTTATCGTAACAAAGATCAGTCACTGCCTTTTATTACCCAATTATTATTTCAGTTATCGAATTTTCTTC
AACAATATGCATTTATTTTATTCATCGGCGGCCTATTTAGCGGTATTGTTAGCTATTTTTTAGCGAAAAAGAGGCTTTTT
TGGCGTACCTTAAGATCGCGTTTATTAAATCATATGCCAGGGTTTCAGCAAATTATTAAAGATGCTCGAATTATTTTCTT
TAGTCAAAATCTTGCGTTAATGCTTAATGCACATATTCATTTAGATGCAACGTTAAAAGCATTTTTATCAGAACATCGCC
AAGATCCGGTATTACATCAGGAGATTTTGAGTATATTAAGTTTATTAAAGCAAGGTTATAAATTCTCTGAGGGGCTTAAT
CCAACCGTATTTACTAGCCAAGTAGTACAAATGATGGCAATTGGCGAACAAAGTGGTAATTTGGCTAAAATGTGTATGTG
TATTAGTCAACTGTATCAGCAAAAACTAGACTACCAAATTGATTTGTTTGCTCAATTACTTGAACCGGTTTTAATGTTAG
TGATTGGCATTATTGTGGGGACGATTTTGATTGGGATTTATTTGCCTATTTTTGATATGGGAGCATTGGTGTAA
ATGCTGAAAATATATGAATTTCATTGGCGGGCTTTTAATCGTTTTAATCAACGGCAAAAAGGTAAATCTCTGGCCAAAAG
TCACGATGAATTAGAACAACGGCTATTAGCTAAAGGCTATTCAAATATCCATATTCAACGTGATTTTATTTTAGTTAGGA
AACCCAAAAGCGAACAAATCACTCAATTAATTAATCAGTTAGCTATGTTATTGAATGCCTCGGTTCCATTAAAACAATCG
CTGGTGATGGTATTAGAAAACGTACATAATATTAAATTATATTTATGGTTATATGAAATTATTACGCTGTTAGAAGCGGG
GCATACTTTTTCAGCCAGTCTCACTAAAATGAACGTTTATTTGACTAAGCAAGAAATTCAGTTAATTAAGATGGGAGAAC
AGAGTGGGCGTTTAGCCATTATGCTAGATAACATTGCAAAAGTACGTACTCAATCACAGAAATTAGCTAATAAAGTAAAG
AAAATTATGTTTTATCCGGCGATTATTTTAGCCGTATCAATTAGTGTATTAATTGGATTGTTATTATTTATTGTGCCTCA
ATTTGAAGATCTTTATCGTAACAAAGATCAGTCACTGCCTTTTATTACCCAATTATTATTTCAGTTATCGAATTTTCTTC
AACAATATGCATTTATTTTATTCATCGGCGGCCTATTTAGCGGTATTGTTAGCTATTTTTTAGCGAAAAAGAGGCTTTTT
TGGCGTACCTTAAGATCGCGTTTATTAAATCATATGCCAGGGTTTCAGCAAATTATTAAAGATGCTCGAATTATTTTCTT
TAGTCAAAATCTTGCGTTAATGCTTAATGCACATATTCATTTAGATGCAACGTTAAAAGCATTTTTATCAGAACATCGCC
AAGATCCGGTATTACATCAGGAGATTTTGAGTATATTAAGTTTATTAAAGCAAGGTTATAAATTCTCTGAGGGGCTTAAT
CCAACCGTATTTACTAGCCAAGTAGTACAAATGATGGCAATTGGCGAACAAAGTGGTAATTTGGCTAAAATGTGTATGTG
TATTAGTCAACTGTATCAGCAAAAACTAGACTACCAAATTGATTTGTTTGCTCAATTACTTGAACCGGTTTTAATGTTAG
TGATTGGCATTATTGTGGGGACGATTTTGATTGGGATTTATTTGCCTATTTTTGATATGGGAGCATTGGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
51.134 |
100 |
0.511 |
| pilC | Haemophilus influenzae Rd KW20 |
39.75 |
100 |
0.401 |
| pilC | Haemophilus influenzae 86-028NP |
39.25 |
100 |
0.395 |