Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | A6036_RS05235 | Genome accession | NZ_CP015424 |
| Coordinates | 1112656..1113798 (-) | Length | 380 a.a. |
| NCBI ID | WP_064085205.1 | Uniprot ID | A0AAC8UDE8 |
| Organism | [Haemophilus] ducreyi strain VAN1 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 1107656..1118798
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6036_RS05210 (A6036_05235) | rplA | 1107956..1108645 (-) | 690 | WP_010945641.1 | 50S ribosomal protein L1 | - |
| A6036_RS05215 (A6036_05240) | rplK | 1108650..1109078 (-) | 429 | WP_005599211.1 | 50S ribosomal protein L11 | - |
| A6036_RS05220 (A6036_05245) | nusG | 1109266..1109829 (-) | 564 | WP_010945642.1 | transcription termination/antitermination protein NusG | - |
| A6036_RS05225 (A6036_05250) | secE | 1109831..1110247 (-) | 417 | WP_010945643.1 | preprotein translocase subunit SecE | - |
| A6036_RS05230 (A6036_05255) | - | 1110537..1112546 (+) | 2010 | WP_064085204.1 | OPT family oligopeptide transporter | - |
| A6036_RS05235 (A6036_05260) | dprA | 1112656..1113798 (-) | 1143 | WP_064085205.1 | DNA-processing protein DprA | Machinery gene |
| A6036_RS05240 (A6036_05265) | def | 1113988..1114503 (+) | 516 | WP_010945646.1 | peptide deformylase | - |
| A6036_RS05245 (A6036_05270) | rfaD | 1114635..1115576 (+) | 942 | WP_010945647.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| A6036_RS05250 (A6036_05275) | - | 1115672..1116004 (-) | 333 | WP_010945648.1 | DMT family transporter | - |
| A6036_RS05255 (A6036_05280) | - | 1116460..1116750 (-) | 291 | WP_041603730.1 | YfcZ/YiiS family protein | - |
| A6036_RS08485 | - | 1116882..1117178 (-) | 297 | WP_010945650.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 42135.76 Da Isoelectric Point: 6.3418
>NTDB_id=179422 A6036_RS05235 WP_064085205.1 1112656..1113798(-) (dprA) [[Haemophilus] ducreyi strain VAN1]
MKQLALLKLLQIPQLGPQRIARLLNQIDFAEFCQYSKKELQQMGWNDKQIQCWFQPEMRWIDRAIAWAEQPNQRLVTLFD
KDYPFLLQQISTAPPLLFVRGSVASLTLPQIAIVGSRDYSPYGEYWASYFTRELIEQGFAVTSGLAIGIDGFCHKQAVKQ
QAVTIAVLGSGLDQVYPARHKKLAEQIIANGGALVSEFFPDQPPLAEHFPRRNRIISGLSLGTLVVEATINSGSLITARY
ALEQGREVFALPNTAQNPYAVGCHQLIKEGAILTESIADILQAIQHQYRPSAKLVNANSMNNPPNIANQQLTIPLTDKIL
PDLTACQQQIMQNISFTPIAIDDLAKATDIAVEILLVELLGLELLGMIKQVCGGYVVTQA
MKQLALLKLLQIPQLGPQRIARLLNQIDFAEFCQYSKKELQQMGWNDKQIQCWFQPEMRWIDRAIAWAEQPNQRLVTLFD
KDYPFLLQQISTAPPLLFVRGSVASLTLPQIAIVGSRDYSPYGEYWASYFTRELIEQGFAVTSGLAIGIDGFCHKQAVKQ
QAVTIAVLGSGLDQVYPARHKKLAEQIIANGGALVSEFFPDQPPLAEHFPRRNRIISGLSLGTLVVEATINSGSLITARY
ALEQGREVFALPNTAQNPYAVGCHQLIKEGAILTESIADILQAIQHQYRPSAKLVNANSMNNPPNIANQQLTIPLTDKIL
PDLTACQQQIMQNISFTPIAIDDLAKATDIAVEILLVELLGLELLGMIKQVCGGYVVTQA
Nucleotide
Download Length: 1143 bp
>NTDB_id=179422 A6036_RS05235 WP_064085205.1 1112656..1113798(-) (dprA) [[Haemophilus] ducreyi strain VAN1]
ATGAAACAATTGGCATTACTTAAATTATTGCAGATTCCACAACTAGGCCCACAGCGGATTGCGCGTTTATTAAATCAAAT
TGATTTTGCTGAATTTTGTCAATATAGCAAAAAAGAACTACAGCAAATGGGATGGAATGACAAACAAATTCAATGTTGGT
TTCAGCCTGAAATGCGTTGGATTGATCGGGCAATAGCTTGGGCAGAACAGCCAAATCAACGGCTTGTGACACTGTTTGAT
AAAGATTATCCCTTTTTATTACAGCAAATTAGCACTGCACCACCATTATTATTTGTGCGTGGTTCGGTGGCTAGCTTAAC
TCTGCCACAAATTGCGATTGTTGGCAGTCGTGATTATTCTCCTTATGGAGAGTATTGGGCCTCTTATTTTACACGAGAAT
TAATTGAACAAGGTTTTGCGGTAACAAGTGGCTTGGCGATTGGCATTGATGGTTTTTGTCATAAACAAGCAGTAAAACAG
CAAGCGGTGACTATTGCTGTATTAGGTAGCGGTTTAGATCAAGTTTATCCCGCACGTCATAAAAAATTAGCAGAACAAAT
TATTGCGAATGGTGGAGCATTAGTGTCAGAGTTTTTTCCCGATCAACCCCCGCTAGCGGAACATTTTCCTCGTCGAAATC
GTATTATTAGTGGCTTGTCACTTGGTACTTTAGTGGTAGAAGCAACGATTAATAGTGGCTCATTAATTACCGCACGCTAT
GCTTTAGAGCAAGGGCGAGAGGTCTTTGCTTTGCCGAATACTGCACAAAATCCTTATGCAGTGGGTTGCCATCAATTGAT
TAAAGAAGGCGCTATTTTAACCGAGTCGATAGCGGATATTTTACAAGCGATTCAGCATCAATATCGACCATCAGCTAAGT
TAGTTAATGCAAATAGCATGAATAATCCCCCTAATATTGCTAATCAGCAATTGACAATACCGTTAACGGATAAAATATTG
CCGGATTTGACCGCTTGTCAGCAACAGATTATGCAAAATATCAGTTTTACGCCAATTGCAATAGATGATTTAGCCAAAGC
AACGGATATAGCGGTCGAAATATTATTAGTTGAGCTACTTGGTTTAGAATTATTAGGTATGATTAAACAGGTTTGTGGGG
GATATGTAGTGACACAGGCATAA
ATGAAACAATTGGCATTACTTAAATTATTGCAGATTCCACAACTAGGCCCACAGCGGATTGCGCGTTTATTAAATCAAAT
TGATTTTGCTGAATTTTGTCAATATAGCAAAAAAGAACTACAGCAAATGGGATGGAATGACAAACAAATTCAATGTTGGT
TTCAGCCTGAAATGCGTTGGATTGATCGGGCAATAGCTTGGGCAGAACAGCCAAATCAACGGCTTGTGACACTGTTTGAT
AAAGATTATCCCTTTTTATTACAGCAAATTAGCACTGCACCACCATTATTATTTGTGCGTGGTTCGGTGGCTAGCTTAAC
TCTGCCACAAATTGCGATTGTTGGCAGTCGTGATTATTCTCCTTATGGAGAGTATTGGGCCTCTTATTTTACACGAGAAT
TAATTGAACAAGGTTTTGCGGTAACAAGTGGCTTGGCGATTGGCATTGATGGTTTTTGTCATAAACAAGCAGTAAAACAG
CAAGCGGTGACTATTGCTGTATTAGGTAGCGGTTTAGATCAAGTTTATCCCGCACGTCATAAAAAATTAGCAGAACAAAT
TATTGCGAATGGTGGAGCATTAGTGTCAGAGTTTTTTCCCGATCAACCCCCGCTAGCGGAACATTTTCCTCGTCGAAATC
GTATTATTAGTGGCTTGTCACTTGGTACTTTAGTGGTAGAAGCAACGATTAATAGTGGCTCATTAATTACCGCACGCTAT
GCTTTAGAGCAAGGGCGAGAGGTCTTTGCTTTGCCGAATACTGCACAAAATCCTTATGCAGTGGGTTGCCATCAATTGAT
TAAAGAAGGCGCTATTTTAACCGAGTCGATAGCGGATATTTTACAAGCGATTCAGCATCAATATCGACCATCAGCTAAGT
TAGTTAATGCAAATAGCATGAATAATCCCCCTAATATTGCTAATCAGCAATTGACAATACCGTTAACGGATAAAATATTG
CCGGATTTGACCGCTTGTCAGCAACAGATTATGCAAAATATCAGTTTTACGCCAATTGCAATAGATGATTTAGCCAAAGC
AACGGATATAGCGGTCGAAATATTATTAGTTGAGCTACTTGGTTTAGAATTATTAGGTATGATTAAACAGGTTTGTGGGG
GATATGTAGTGACACAGGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Glaesserella parasuis strain SC1401 |
68.365 |
98.158 |
0.671 |
| dprA | Haemophilus influenzae Rd KW20 |
49.563 |
90.263 |
0.447 |
| dprA | Vibrio campbellii strain DS40M4 |
45.213 |
98.947 |
0.447 |
| dprA | Vibrio cholerae strain A1552 |
42.4 |
98.684 |
0.418 |
| dprA | Legionella pneumophila strain ERS1305867 |
38.564 |
98.947 |
0.382 |