Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MCBMB27_RS15565 Genome accession   NZ_CP015367
Coordinates   3437304..3437879 (+) Length   191 a.a.
NCBI ID   WP_043354664.1    Uniprot ID   A0A089NZQ9
Organism   Methylobacterium phyllosphaerae strain CBMB27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3432304..3442879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCBMB27_RS15545 (MCBMB27_03216) - 3433388..3434317 (+) 930 WP_052083662.1 sulfite oxidase heme-binding subunit YedZ -
  MCBMB27_RS15550 (MCBMB27_03217) - 3434386..3434781 (+) 396 WP_075381990.1 hypothetical protein -
  MCBMB27_RS29645 - 3434892..3435266 (+) 375 WP_139231556.1 hypothetical protein -
  MCBMB27_RS30250 (MCBMB27_03218) - 3435279..3435455 (-) 177 WP_164706367.1 hypothetical protein -
  MCBMB27_RS15555 (MCBMB27_03219) - 3435593..3435991 (-) 399 WP_075380813.1 DUF4174 domain-containing protein -
  MCBMB27_RS15560 (MCBMB27_03220) - 3436116..3437135 (+) 1020 WP_043385082.1 NADP-dependent oxidoreductase -
  MCBMB27_RS15565 (MCBMB27_03221) ssb 3437304..3437879 (+) 576 WP_043354664.1 single-stranded DNA-binding protein Machinery gene
  MCBMB27_RS15570 (MCBMB27_03222) - 3438184..3438660 (-) 477 WP_043385080.1 hypothetical protein -
  MCBMB27_RS15575 (MCBMB27_03223) - 3438824..3439123 (-) 300 WP_075380814.1 GCG_CRPN prefix-to-repeats domain-containing protein -
  MCBMB27_RS15580 (MCBMB27_03224) - 3439263..3439577 (-) 315 WP_043354509.1 hypothetical protein -
  MCBMB27_RS15585 (MCBMB27_03225) - 3439667..3439954 (-) 288 WP_236952721.1 hypothetical protein -
  MCBMB27_RS15590 (MCBMB27_03226) - 3440046..3440828 (-) 783 WP_043385070.1 SDR family NAD(P)-dependent oxidoreductase -
  MCBMB27_RS15595 (MCBMB27_03227) - 3441106..3441984 (-) 879 WP_043354517.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20130.03 Da        Isoelectric Point: 6.0119

>NTDB_id=178854 MCBMB27_RS15565 WP_043354664.1 3437304..3437879(+) (ssb) [Methylobacterium phyllosphaerae strain CBMB27]
MAGSVNKVILVGNLGRDPEMRRLGSGDPVCNLRLATSESWKDKATGERKEKTEWHSVVIYNDNLARVAEQYLRKGSKVYI
EGQLQTRKWTDNSGVEKYTTEVVLQRFRGEMTILDGRGGGGDFAGEEEGGGQISRGGDFGGGRGGDRGGDFGGGRAQGGE
RRPAPASSGGGGNGGGGGSRGGYDLDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=178854 MCBMB27_RS15565 WP_043354664.1 3437304..3437879(+) (ssb) [Methylobacterium phyllosphaerae strain CBMB27]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTGGGCAATCTCGGGCGTGATCCCGAGATGCGCCGCCTCGGGTCGGGCGA
CCCGGTCTGCAACCTGCGGCTCGCGACGTCGGAGTCGTGGAAGGACAAGGCGACCGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTCGTCATCTACAACGACAACCTCGCCCGGGTGGCCGAGCAGTACCTGCGCAAGGGCTCGAAGGTCTATATC
GAGGGCCAGCTTCAGACCCGGAAGTGGACCGACAATTCCGGCGTCGAGAAGTACACGACCGAGGTGGTGCTCCAGCGCTT
CCGCGGCGAGATGACGATCCTCGACGGGCGCGGCGGCGGCGGCGACTTCGCCGGCGAGGAAGAGGGCGGCGGCCAGATCA
GCCGCGGCGGGGATTTCGGGGGCGGCCGGGGCGGTGACCGCGGCGGCGATTTCGGAGGCGGTCGCGCCCAGGGCGGCGAG
CGGCGTCCGGCTCCGGCCTCCTCGGGCGGTGGCGGCAACGGCGGCGGCGGCGGAAGCCGCGGCGGCTACGACCTCGACGA
CGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089NZQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.475

100

0.492
  ssb Vibrio cholerae strain A1552

47.059

97.906

0.461
  ssb Neisseria meningitidis MC58

38.22

100

0.382
  ssb Neisseria gonorrhoeae MS11

37.696

100

0.377

Multiple sequence alignment