Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A5480_RS01810 Genome accession   NZ_CP015343
Coordinates   403348..403827 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila strain D-7631     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 398348..408827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5480_RS01775 (A5480_01775) rplO 398480..398914 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  A5480_RS01780 (A5480_01780) secY 398917..400245 (+) 1329 WP_027224266.1 preprotein translocase subunit SecY -
  A5480_RS15365 rpmJ 400262..400375 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  A5480_RS01785 (A5480_01785) rpsM 400453..400809 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  A5480_RS01790 (A5480_01790) rpsK 400833..401231 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  A5480_RS01795 (A5480_01795) rpsD 401248..401868 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  A5480_RS01800 (A5480_01800) - 401887..402879 (+) 993 WP_011213014.1 DNA-directed RNA polymerase subunit alpha -
  A5480_RS01805 (A5480_01805) rplQ 402898..403281 (+) 384 WP_011213015.1 50S ribosomal protein L17 -
  A5480_RS01810 (A5480_01810) ssb 403348..403827 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  A5480_RS01815 (A5480_01815) - 403911..405278 (-) 1368 WP_027224265.1 MFS transporter -
  A5480_RS01820 (A5480_01820) fabL 405440..406198 (+) 759 WP_027224264.1 enoyl-[acyl-carrier-protein] reductase FabL -
  A5480_RS01825 (A5480_01825) - 406269..406682 (+) 414 WP_010946108.1 acyl carrier protein -
  A5480_RS01830 (A5480_01830) - 406682..407578 (+) 897 WP_027224263.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=178539 A5480_RS01810 WP_011213016.1 403348..403827(-) (ssb) [Legionella pneumophila strain D-7631]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=178539 A5480_RS01810 WP_011213016.1 403348..403827(-) (ssb) [Legionella pneumophila strain D-7631]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATACATTCGTAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATACA
AATGCTCGATAGCAAAGGAAGTAGTGCTACTAATTACGACGACATGCCTTCATTTCAGGGAAGCTCTACCCCTCAACAAG
CTTCAACAAAGAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment