Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6B35_RS18365 Genome accession   NZ_CP015318
Coordinates   3914739..3915257 (+) Length   172 a.a.
NCBI ID   WP_006202049.1    Uniprot ID   G6Y9B4
Organism   Mesorhizobium amorphae CCNWGS0123     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3909739..3920257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6B35_RS18340 (A6B35_18310) - 3912311..3912601 (-) 291 WP_006202044.1 hypothetical protein -
  A6B35_RS18345 (A6B35_18315) - 3912674..3913279 (-) 606 WP_006202045.1 ATP-dependent Clp protease proteolytic subunit -
  A6B35_RS18350 (A6B35_18320) - 3913302..3913778 (-) 477 WP_006202046.1 SRPBCC domain-containing protein -
  A6B35_RS18355 (A6B35_18325) - 3913775..3914089 (-) 315 WP_006202047.1 metalloregulator ArsR/SmtB family transcription factor -
  A6B35_RS18360 (A6B35_18330) - 3914134..3914553 (-) 420 WP_244425921.1 cupin domain-containing protein -
  A6B35_RS18365 (A6B35_18335) ssb 3914739..3915257 (+) 519 WP_006202049.1 single-stranded DNA-binding protein Machinery gene
  A6B35_RS18370 (A6B35_18340) - 3915285..3915683 (+) 399 WP_006202050.1 DUF2306 domain-containing protein -
  A6B35_RS18375 (A6B35_18345) - 3915715..3916140 (+) 426 WP_006202051.1 OsmC family protein -
  A6B35_RS18380 (A6B35_18350) - 3916393..3917118 (+) 726 WP_006202052.1 hypothetical protein -
  A6B35_RS35635 (A6B35_18355) - 3917534..3917959 (+) 426 WP_006202053.1 hypothetical protein -
  A6B35_RS18390 (A6B35_18360) - 3918192..3919937 (+) 1746 WP_244425923.1 type I secretion system permease/ATPase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18607.54 Da        Isoelectric Point: 7.0221

>NTDB_id=178469 A6B35_RS18365 WP_006202049.1 3914739..3915257(+) (ssb) [Mesorhizobium amorphae CCNWGS0123]
MAGSINKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTEWHNVVIFNDQIAKVAEQYLKKGMKVYV
EGQLQTRKWQDQTGNDRYTTEIVLQKFRGELQMLDARGEGGGQVGNYAGGGNSSRGSDFGQSGPNEGFSRGGGGAKGGGG
GSSRELDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=178469 A6B35_RS18365 WP_006202049.1 3914739..3915257(+) (ssb) [Mesorhizobium amorphae CCNWGS0123]
ATGGCGGGTAGCATCAACAAGGTCATTCTGGTGGGCAATCTCGGGGCGGACCCGGAAATCCGCCGCCTGAACTCGGGTGA
GCCGGTCGTCAACATTCGCATCGCCACCTCGGAAAGCTGGCGCGACAAGAATTCCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACAACGTCGTCATCTTCAACGACCAGATCGCCAAGGTCGCCGAGCAGTATCTGAAGAAGGGCATGAAGGTCTATGTC
GAGGGCCAGTTGCAGACGCGCAAATGGCAGGACCAGACCGGCAATGACCGCTACACGACCGAAATCGTGCTGCAGAAATT
CCGCGGTGAATTGCAGATGCTCGACGCGCGCGGCGAGGGCGGCGGCCAGGTCGGCAACTATGCCGGCGGCGGCAACAGCA
GCCGTGGTTCCGATTTCGGCCAGTCCGGCCCGAACGAAGGTTTCAGCCGCGGCGGCGGTGGCGCCAAGGGCGGCGGCGGC
GGTTCGTCGCGCGAGCTGGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G6Y9B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.842

100

0.517
  ssb Vibrio cholerae strain A1552

61.864

68.605

0.424
  ssb Neisseria gonorrhoeae MS11

38.547

100

0.401
  ssb Neisseria meningitidis MC58

37.989

100

0.395

Multiple sequence alignment