Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V471_RS01770 Genome accession   NZ_CP015283
Coordinates   361505..363475 (-) Length   656 a.a.
NCBI ID   WP_084871049.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 356505..368475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS01755 (V471_01760) - 357095..357985 (-) 891 WP_045771785.1 hypothetical protein -
  V471_RS01760 (V471_01765) - 358040..359347 (-) 1308 WP_084871047.1 GHKL domain-containing protein -
  V471_RS01765 (V471_01770) gltX 359814..361268 (-) 1455 WP_084871048.1 glutamate--tRNA ligase -
  V471_RS01770 (V471_01775) amiA 361505..363475 (-) 1971 WP_084871049.1 peptide ABC transporter substrate-binding protein Regulator
  V471_RS01775 (V471_01780) rplA 363657..364346 (-) 690 WP_037598508.1 50S ribosomal protein L1 -
  V471_RS01780 (V471_01785) rplK 364446..364871 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  V471_RS01785 (V471_01790) - 365043..365396 (+) 354 WP_060973052.1 DUF3397 domain-containing protein -
  V471_RS01790 (V471_01795) - 365491..365988 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  V471_RS01795 (V471_01800) - 366140..366835 (-) 696 WP_037598509.1 TIGR00266 family protein -
  V471_RS01800 (V471_01805) radA 366924..368285 (-) 1362 WP_073686093.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72991.87 Da        Isoelectric Point: 5.0178

>NTDB_id=178268 V471_RS01770 WP_084871049.1 361505..363475(-) (amiA) [Streptococcus salivarius strain ATCC 25975]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYLATNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGEFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGINIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIYVKPDFVQADGKDFGTMVMDQLPSYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSKKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNSENTKSFMGYDDPNSQAVQKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVISRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=178268 V471_RS01770 WP_084871049.1 361505..363475(-) (amiA) [Streptococcus salivarius strain ATCC 25975]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTACGGTGGCGATCCTGCAACCCTAGACTATCTTGCTACAAACAAGAAAA
ATATGACGACAGCTGTGAGTAATGGTGTTGATGGTTTGTTTGAAAATGACCAATATGGGAATCTAAAACCTTCTGTAGCC
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGTGTCAAATGGTATACTTCAGATGG
TGAAGAGTATGCTGATGTGACGGCTAAGGACTTTGTGACAGGACTTAAACATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACGCTTAGTCAACCAGAACCTTATTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGGAGAATTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGATCCGACTTCTATTCTCTATA
ACGGTCCATACCTTCTTAAATCTTTGACAACGAAATCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
AATGTCTACTTTGATACAGTTAAATTGACTTATGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACAGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGTTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTATTAATATCGATCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCTATTGACCGTAC
GAATTATGCTGCACAACTTAACGGTAAAGAGGGTGGTAGTACTGCCGTTCGTAATATCTATGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAAGATTTCGGAACTATGGTAATGGATCAATTACCAAGCTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCTAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAAAAAAATCTTTGTGAATCAAGTGCAGTCACTTA
AACAATCTATTGAATCCGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCACCAATTGTCAACTGATGATTTCTATAAT
ATTACCTACTCTGCTTCAAATGCAGCTGCAGAGGATTGGGACTTGTCAGTAGGTGTGGCTTGGGAGCCTGATTACCTTGA
TCCATCAACTTATCTTGATGTCTTGAAGACTACAAATAGTGAAAATACTAAATCTTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTCAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAATGG
TGCAGCCGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCATATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTAACTAAGAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCTAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.97

100

0.7
  amiA3 Streptococcus thermophilus LMD-9

68.189

100

0.683
  amiA3 Streptococcus thermophilus LMG 18311

67.428

100

0.675

Multiple sequence alignment