Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V471_RS01800 Genome accession   NZ_CP015283
Coordinates   366924..368285 (-) Length   453 a.a.
NCBI ID   WP_073686093.1    Uniprot ID   A0AAW6D859
Organism   Streptococcus salivarius strain ATCC 25975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 361924..373285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS01775 (V471_01780) rplA 363657..364346 (-) 690 WP_037598508.1 50S ribosomal protein L1 -
  V471_RS01780 (V471_01785) rplK 364446..364871 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  V471_RS01785 (V471_01790) - 365043..365396 (+) 354 WP_060973052.1 DUF3397 domain-containing protein -
  V471_RS01790 (V471_01795) - 365491..365988 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  V471_RS01795 (V471_01800) - 366140..366835 (-) 696 WP_037598509.1 TIGR00266 family protein -
  V471_RS01800 (V471_01805) radA 366924..368285 (-) 1362 WP_073686093.1 DNA repair protein RadA Machinery gene
  V471_RS01805 (V471_01810) - 368282..368749 (-) 468 WP_002886984.1 isochorismatase family protein -
  V471_RS01810 (V471_01815) - 368759..369205 (-) 447 WP_002886985.1 dUTP diphosphatase -
  V471_RS01815 (V471_01820) - 369412..370014 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  V471_RS01820 (V471_01825) - 370033..371283 (+) 1251 WP_002886987.1 NAD(P)H-dependent oxidoreductase -
  V471_RS01825 (V471_01830) - 371400..372191 (+) 792 WP_084871050.1 formate/nitrite transporter family protein -
  V471_RS01830 (V471_01835) - 372200..372781 (+) 582 WP_084871051.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49463.86 Da        Isoelectric Point: 6.6528

>NTDB_id=178269 V471_RS01800 WP_073686093.1 366924..368285(-) (radA) [Streptococcus salivarius strain ATCC 25975]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=178269 V471_RS01800 WP_073686093.1 366924..368285(-) (radA) [Streptococcus salivarius strain ATCC 25975]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGTCCCAACTG
TTCTTCCTGGTCCTCTTTTGAGGAGGAAGTTGAGGTGCAGGAGGTGAAAAATGCTCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCGACTCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTAGAG
GCCATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGGCCACGTATGTTGGAACACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAGGTGCTAAATCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGTGCTACAGGTTCTGCCATTG
TTGTGACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACACCAACCGTCTTTGGTAATGCCAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCGGCTGGTGGTGTCAAATTGGACGAGCCAGCTATTGACCTCGCTGTAGCCGTTGCGA
TTGCTTCTAGTTACAAGGAGCTTCCAACTAATCCACAAGAAGCTTTTATAGGAGAAATTGGGTTGACTGGAGAGATTCGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAATTAGGTTTTACTAAGATTTATGCTCCAAAGAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACGACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.962

100

0.89
  radA Streptococcus pneumoniae D39

88.962

100

0.89
  radA Streptococcus pneumoniae R6

88.962

100

0.89
  radA Streptococcus pneumoniae TIGR4

88.962

100

0.89
  radA Streptococcus mitis NCTC 12261

88.962

100

0.89
  radA Streptococcus mitis SK321

88.962

100

0.89
  radA Bacillus subtilis subsp. subtilis str. 168

61.589

100

0.616

Multiple sequence alignment