Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   NX99_RS01155 Genome accession   NZ_CP015282
Coordinates   347317..348732 (+) Length   471 a.a.
NCBI ID   WP_073687949.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 342317..353732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS01130 (NX99_01120) - 342765..343337 (-) 573 WP_084914458.1 ECF transporter S component -
  NX99_RS01135 (NX99_01125) coaC 343366..343911 (-) 546 WP_037600829.1 phosphopantothenoylcysteine decarboxylase -
  NX99_RS01140 (NX99_01130) - 343904..344587 (-) 684 WP_037600832.1 phosphopantothenate--cysteine ligase -
  NX99_RS01145 (NX99_01135) - 344783..346453 (+) 1671 WP_037600835.1 formate--tetrahydrofolate ligase -
  NX99_RS01150 (NX99_01140) ciaR 346653..347327 (+) 675 WP_002891134.1 response regulator transcription factor Regulator
  NX99_RS01155 (NX99_01145) ciaH 347317..348732 (+) 1416 WP_073687949.1 sensor histidine kinase Regulator
  NX99_RS01160 (NX99_01150) rpsT 348810..349046 (-) 237 WP_004182129.1 30S ribosomal protein S20 -
  NX99_RS01165 (NX99_01155) coaA 349116..350036 (-) 921 WP_064525024.1 type I pantothenate kinase -
  NX99_RS01170 (NX99_01160) - 350149..350739 (+) 591 WP_084914459.1 class I SAM-dependent methyltransferase -
  NX99_RS01175 (NX99_01165) - 350736..352013 (+) 1278 WP_084914461.1 pyrimidine-nucleoside phosphorylase -
  NX99_RS01180 (NX99_01170) deoC 352048..352710 (+) 663 WP_084914463.1 deoxyribose-phosphate aldolase -
  NX99_RS01185 (NX99_01175) - 352697..353095 (+) 399 WP_084914464.1 cytidine deaminase -

Sequence


Protein


Download         Length: 471 a.a.        Molecular weight: 53476.25 Da        Isoelectric Point: 7.9820

>NTDB_id=178196 NX99_RS01155 WP_073687949.1 347317..348732(+) (ciaH) [Streptococcus salivarius strain ATCC 27945]
MLTKFFNYLFRRIKSDGFKSFIHFFATFSGIFLIMTVMILQILSYGVYSNVDSSLKMAATKTNSYLEMEMLKRELFLTSE
VDQNNTTTIYQAYDTKESTAETPDSSGSKNEPKKKSKIEDAPHDLSVAANTSVLVLDKNGKVLNVVDKFSSLSNLPIDKN
NIDVISKGSAQNYFDQTEKYRLITEKVDNSLYPDAKYLVIAINTTQLEEATERYVKLIVIMMSFFWLLSVAASMYLAKWS
RRPIQESLEKQKAFVENASHELRTPLAVIQNRLEVLFRKPESTILDNSENIASSLDEVRNMRLLTTNLLNLARRDDGIKP
EIETLEPAFFDTVFTNYAMIAEENEKGFTAQNQVGRPIQTDKTLLKQLMTILFDNAIKYTEDDGHVTFTVRTNDRHLYIC
VADNGPGISDSDKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIVLALKGTIVVKDNQPKGTIFEVKITGV

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=178196 NX99_RS01155 WP_073687949.1 347317..348732(+) (ciaH) [Streptococcus salivarius strain ATCC 27945]
ATGCTGACTAAATTTTTCAATTATCTCTTTAGGAGAATCAAGTCAGACGGATTTAAGTCGTTCATTCATTTCTTTGCCAC
TTTTTCTGGTATTTTCCTTATCATGACTGTCATGATTTTGCAGATTCTGAGTTACGGCGTTTATTCCAATGTGGACTCTA
GTCTGAAAATGGCAGCCACTAAAACCAATTCTTATTTAGAAATGGAAATGCTAAAACGGGAACTTTTTCTGACTTCTGAG
GTAGATCAAAATAATACGACAACCATTTACCAAGCCTATGATACTAAAGAGTCGACAGCTGAAACACCCGACTCGAGTGG
CTCTAAAAATGAACCTAAGAAGAAATCAAAAATTGAAGATGCCCCTCACGATTTATCTGTTGCGGCAAACACCAGTGTCT
TAGTGCTTGATAAGAATGGAAAAGTCCTCAATGTCGTTGATAAATTTTCAAGCTTATCCAATTTACCAATAGATAAAAAT
AACATTGATGTTATCAGCAAGGGAAGTGCTCAGAATTATTTCGATCAAACGGAAAAGTATCGTCTGATCACTGAGAAAGT
AGACAATAGTCTCTATCCTGATGCTAAGTACCTTGTTATTGCGATTAATACAACTCAATTGGAAGAAGCCACTGAACGTT
ATGTCAAGCTAATTGTCATCATGATGAGTTTCTTCTGGCTCTTGTCAGTTGCAGCTAGTATGTATTTGGCCAAGTGGTCA
AGACGTCCTATCCAGGAAAGCTTGGAGAAGCAGAAAGCATTTGTTGAAAATGCTAGTCATGAGTTACGGACACCGCTTGC
TGTGATTCAAAACAGGTTAGAAGTTCTTTTCCGTAAGCCTGAGAGTACTATTTTAGATAATTCAGAGAATATTGCTTCAA
GTCTTGATGAAGTACGCAACATGCGTCTTTTGACGACTAATCTCTTAAACTTGGCTCGTCGTGACGATGGTATTAAACCA
GAAATTGAAACATTAGAACCTGCTTTCTTTGATACAGTATTTACCAACTATGCCATGATTGCAGAAGAAAATGAGAAAGG
TTTCACGGCTCAAAATCAAGTTGGTCGTCCAATCCAGACTGATAAAACGTTATTGAAGCAGCTAATGACCATCTTATTTG
ATAATGCTATTAAATATACGGAAGATGACGGACATGTTACCTTTACTGTTCGCACTAATGACCGCCATCTTTATATTTGT
GTAGCTGATAATGGTCCTGGAATATCAGATAGTGATAAGAAAAAAATCTTTGATCGCTTTTATCGCGTAGATAAGGCTAG
AACCAGACAAAAAGGTGGGTTTGGACTTGGCTTATCCCTAGCGCAACAAATTGTTTTAGCCCTAAAAGGAACAATTGTTG
TTAAAGATAATCAACCAAAGGGAACGATTTTTGAAGTTAAGATTACTGGAGTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

56.957

97.665

0.556

  ciaH Streptococcus pneumoniae Rx1

50.216

98.514

0.495

  ciaH Streptococcus pneumoniae D39

50.216

98.514

0.495

  ciaH Streptococcus pneumoniae R6

50.216

98.514

0.495

  ciaH Streptococcus pneumoniae TIGR4

50.216

98.514

0.495


Multiple sequence alignment