Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BTI679_RS28480 Genome accession   NZ_CP015257
Coordinates   5462170..5462691 (-) Length   173 a.a.
NCBI ID   WP_064460038.1    Uniprot ID   A0A2A8BJ32
Organism   Bacillus wiedmannii strain Bt18679     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5457170..5467691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI679_RS28460 (BTI679_57720) rplI 5458380..5458826 (-) 447 WP_000864225.1 50S ribosomal protein L9 -
  BTI679_RS28465 (BTI679_57730) - 5458823..5460796 (-) 1974 WP_103655229.1 DHH family phosphoesterase -
  BTI679_RS28470 (BTI679_57740) - 5460875..5461810 (-) 936 WP_064475176.1 YybS family protein -
  BTI679_RS28475 (BTI679_57750) rpsR 5461892..5462125 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  BTI679_RS28480 (BTI679_57760) ssbA 5462170..5462691 (-) 522 WP_064460038.1 single-stranded DNA-binding protein Machinery gene
  BTI679_RS28485 (BTI679_57770) rpsF 5462718..5463008 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  BTI679_RS28490 (BTI679_57780) ychF 5463200..5464300 (-) 1101 WP_088047702.1 redox-regulated ATPase YchF -
  BTI679_RS28495 (BTI679_57790) - 5464415..5464612 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  BTI679_RS28500 (BTI679_57800) - 5464633..5465490 (-) 858 WP_000362298.1 mechanosensitive ion channel family protein -
  BTI679_RS28505 (BTI679_57810) yyaC 5465751..5466347 (+) 597 WP_088047701.1 spore protease YyaC -
  BTI679_RS28510 (BTI679_57820) spo0J 5466368..5467219 (-) 852 WP_001051813.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18850.63 Da        Isoelectric Point: 4.9222

>NTDB_id=178147 BTI679_RS28480 WP_064460038.1 5462170..5462691(-) (ssbA) [Bacillus wiedmannii strain Bt18679]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNQGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=178147 BTI679_RS28480 WP_064460038.1 5462170..5462691(-) (ssbA) [Bacillus wiedmannii strain Bt18679]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATCAAGGCAACCAAGGCAACCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A8BJ32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387

Multiple sequence alignment