Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I596_RS03815 | Genome accession | NZ_CP015249 |
| Coordinates | 981923..982438 (+) | Length | 171 a.a. |
| NCBI ID | WP_067644428.1 | Uniprot ID | - |
| Organism | Dokdonella koreensis DS-123 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 976923..987438
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I596_RS03800 (I596_816) | murL | 977229..978566 (-) | 1338 | WP_335340375.1 | UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase | - |
| I596_RS03805 (I596_817) | - | 978553..978948 (-) | 396 | WP_067644425.1 | hypothetical protein | - |
| I596_RS03810 (I596_818) | - | 979014..981623 (-) | 2610 | WP_257722436.1 | bifunctional aspartate kinase/diaminopimelate decarboxylase | - |
| I596_RS03815 (I596_819) | ssb | 981923..982438 (+) | 516 | WP_067644428.1 | single-stranded DNA-binding protein | Machinery gene |
| I596_RS03820 (I596_820) | - | 982478..983617 (-) | 1140 | WP_067644431.1 | CAP domain-containing protein | - |
| I596_RS03825 (I596_821) | gspL | 983785..984987 (+) | 1203 | WP_067644435.1 | type II secretion system protein GspL | - |
| I596_RS03830 (I596_822) | - | 984984..985475 (+) | 492 | WP_067644437.1 | type II secretion system protein M | - |
| I596_RS03835 (I596_823) | gspN | 985554..986321 (+) | 768 | WP_067644439.1 | type II secretion system protein N | - |
| I596_RS03840 (I596_824) | - | 986335..987147 (+) | 813 | WP_067644441.1 | inositol monophosphatase family protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 17796.50 Da Isoelectric Point: 5.3273
>NTDB_id=178036 I596_RS03815 WP_067644428.1 981923..982438(+) (ssb) [Dokdonella koreensis DS-123]
MARGINKVILVGNLGADPETRYTASGAAITNIRLATSESWRDKQTGENQERTEWHRVVLFGKLGEIAGEYLKKGRQVYIE
GSLRTNKYTDKDGVERYTTDIVANEMQMLGGGGAGGGGGEGGYGGGGSGGGGGGGYGRERGPARGAAPARSAPPASSNQP
PDTFEDDDIPF
MARGINKVILVGNLGADPETRYTASGAAITNIRLATSESWRDKQTGENQERTEWHRVVLFGKLGEIAGEYLKKGRQVYIE
GSLRTNKYTDKDGVERYTTDIVANEMQMLGGGGAGGGGGEGGYGGGGSGGGGGGGYGRERGPARGAAPARSAPPASSNQP
PDTFEDDDIPF
Nucleotide
Download Length: 516 bp
>NTDB_id=178036 I596_RS03815 WP_067644428.1 981923..982438(+) (ssb) [Dokdonella koreensis DS-123]
ATGGCACGTGGTATCAACAAGGTCATTCTCGTCGGCAACCTCGGCGCCGATCCGGAGACCCGCTACACCGCCAGCGGTGC
GGCGATCACCAACATCCGCCTGGCCACCTCCGAATCCTGGCGCGACAAGCAGACCGGCGAGAACCAGGAGCGGACCGAAT
GGCACCGCGTGGTGCTGTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTCAAGAAGGGACGGCAGGTCTACATCGAG
GGTTCGCTGCGGACCAACAAGTACACCGACAAGGACGGCGTCGAGCGCTACACCACCGACATCGTGGCCAACGAGATGCA
GATGCTCGGCGGCGGTGGTGCCGGCGGCGGTGGCGGTGAAGGCGGCTACGGTGGCGGCGGAAGCGGGGGTGGTGGCGGTG
GCGGCTACGGCCGCGAGCGCGGCCCGGCCCGTGGTGCCGCGCCGGCGCGCTCGGCACCGCCGGCCTCCTCGAACCAGCCG
CCCGACACCTTCGAGGACGACGACATCCCGTTCTGA
ATGGCACGTGGTATCAACAAGGTCATTCTCGTCGGCAACCTCGGCGCCGATCCGGAGACCCGCTACACCGCCAGCGGTGC
GGCGATCACCAACATCCGCCTGGCCACCTCCGAATCCTGGCGCGACAAGCAGACCGGCGAGAACCAGGAGCGGACCGAAT
GGCACCGCGTGGTGCTGTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTCAAGAAGGGACGGCAGGTCTACATCGAG
GGTTCGCTGCGGACCAACAAGTACACCGACAAGGACGGCGTCGAGCGCTACACCACCGACATCGTGGCCAACGAGATGCA
GATGCTCGGCGGCGGTGGTGCCGGCGGCGGTGGCGGTGAAGGCGGCTACGGTGGCGGCGGAAGCGGGGGTGGTGGCGGTG
GCGGCTACGGCCGCGAGCGCGGCCCGGCCCGTGGTGCCGCGCCGGCGCGCTCGGCACCGCCGGCCTCCTCGAACCAGCCG
CCCGACACCTTCGAGGACGACGACATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
51.397 |
100 |
0.538 |
| ssb | Neisseria meningitidis MC58 |
47.701 |
100 |
0.485 |
| ssb | Neisseria gonorrhoeae MS11 |
46.857 |
100 |
0.48 |
| ssb | Glaesserella parasuis strain SC1401 |
44.944 |
100 |
0.468 |