Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A5892_RS19380 Genome accession   NZ_CP015243
Coordinates   4335498..4336112 (-) Length   204 a.a.
NCBI ID   WP_064124179.1    Uniprot ID   -
Organism   Halotalea alkalilenta strain IHB B 13600     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4330498..4341112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5892_RS19365 (A5892_19345) - 4330720..4333212 (+) 2493 WP_082890572.1 ATP-binding cassette domain-containing protein -
  A5892_RS19370 (A5892_19350) - 4333209..4334435 (+) 1227 WP_064124177.1 amidohydrolase family protein -
  A5892_RS19375 (A5892_19355) - 4334602..4335339 (-) 738 WP_223302745.1 GntR family transcriptional regulator -
  A5892_RS19380 (A5892_19360) ssb 4335498..4336112 (-) 615 WP_064124179.1 single-stranded DNA-binding protein Machinery gene
  A5892_RS19385 (A5892_19365) uvrA 4336447..4339299 (+) 2853 WP_064124180.1 excinuclease ABC subunit UvrA -
  A5892_RS19390 (A5892_19370) rplQ 4339442..4339828 (-) 387 WP_027349319.1 50S ribosomal protein L17 -
  A5892_RS19395 (A5892_19375) - 4339870..4340868 (-) 999 WP_064124181.1 DNA-directed RNA polymerase subunit alpha -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22009.92 Da        Isoelectric Point: 5.7735

>NTDB_id=177985 A5892_RS19380 WP_064124179.1 4335498..4336112(-) (ssb) [Halotalea alkalilenta strain IHB B 13600]
MARGVNKVILIGNLGQDPEVRFLPSGNPVCNLRLATTDTWNDRQSGQRQERTEWHTVVLFNKLAEIAQQYVKKGSRLYIE
GRLQTRKWQGQDGQDRYSTEIVANDMQMLDSRAGDFNPNNGGGQGGYQPRGNQGGGAPQDAPQGGYGGGQDYGQAARAPA
HGGGQPRPAPNNAPQQGGYGAPQQNNNGAPNPGSFDDFDDEIPF

Nucleotide


Download         Length: 615 bp        

>NTDB_id=177985 A5892_RS19380 WP_064124179.1 4335498..4336112(-) (ssb) [Halotalea alkalilenta strain IHB B 13600]
ATGGCCCGCGGTGTGAACAAAGTGATCCTGATCGGCAACCTCGGTCAGGATCCTGAAGTGCGTTTCCTGCCCTCGGGCAA
CCCGGTCTGCAATCTGCGCCTGGCCACCACCGACACCTGGAACGACCGCCAGAGCGGTCAGCGCCAGGAACGTACCGAAT
GGCACACGGTGGTGCTGTTCAACAAGCTGGCCGAGATCGCCCAGCAGTACGTCAAGAAAGGCTCCCGACTCTATATCGAA
GGGCGCCTGCAGACGCGCAAATGGCAGGGACAGGACGGCCAGGATCGCTACTCCACCGAGATCGTCGCCAACGACATGCA
GATGCTCGATTCCCGAGCCGGCGATTTCAACCCTAACAATGGGGGTGGTCAGGGCGGTTATCAACCGCGCGGCAACCAGG
GGGGCGGTGCTCCACAGGACGCCCCGCAGGGCGGCTATGGTGGCGGCCAGGACTATGGCCAAGCGGCACGCGCTCCGGCC
CATGGTGGCGGCCAGCCGCGCCCGGCGCCGAACAACGCCCCCCAGCAGGGTGGCTATGGCGCCCCGCAGCAGAATAATAA
TGGCGCACCGAACCCGGGTAGCTTCGACGACTTCGACGACGAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.792

100

0.495
  ssb Neisseria gonorrhoeae MS11

46.766

98.529

0.461
  ssb Neisseria meningitidis MC58

45.771

98.529

0.451
  ssb Glaesserella parasuis strain SC1401

44.608

100

0.446

Multiple sequence alignment