Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K529_RS06450 Genome accession   NZ_CP015230
Coordinates   1339587..1340120 (-) Length   177 a.a.
NCBI ID   WP_005617925.1    Uniprot ID   A0A1B1A1D0
Organism   Tritonibacter mobilis F1926     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1334587..1345120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K529_RS06440 (K529_006440) - 1335495..1336808 (+) 1314 WP_005638837.1 HlyC/CorC family transporter -
  K529_RS06445 (K529_006445) - 1337056..1339473 (+) 2418 WP_046002160.1 FAD-dependent oxidoreductase -
  K529_RS06450 (K529_006450) ssb 1339587..1340120 (-) 534 WP_005617925.1 single-stranded DNA-binding protein Machinery gene
  K529_RS06455 (K529_006455) - 1340390..1340965 (+) 576 WP_005617923.1 lytic transglycosylase domain-containing protein -
  K529_RS06460 (K529_006460) - 1341129..1341503 (+) 375 WP_040642012.1 hypothetical protein -
  K529_RS06465 (K529_006465) - 1341642..1342778 (+) 1137 WP_005617919.1 cytochrome-c peroxidase -
  K529_RS06470 (K529_006470) - 1342907..1344322 (+) 1416 WP_005617918.1 sulfotransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18287.90 Da        Isoelectric Point: 5.2795

>NTDB_id=177863 K529_RS06450 WP_005617925.1 1339587..1340120(-) (ssb) [Tritonibacter mobilis F1926]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFNEGLVRVAEQFLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGGFGGGQGGGDYGGGGGGYGGGGNYGGGGGGGNQGGG
FGGGGPSQNIDDDEIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=177863 K529_RS06450 WP_005617925.1 1339587..1340120(-) (ssb) [Tritonibacter mobilis F1926]
ATGGCCGGATCCCTGAACAAAGTAATGCTCATCGGCAACCTTGGCCGCGATCCGGAAGTGCGTAGCTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGGATCGCGACGTCGGAGACGTGGAAGGACCGCAACACCGGTGAGCGCCGTGAAAAAACCGAAT
GGCACTCTGTTGCGATCTTCAACGAAGGTCTGGTGCGTGTCGCAGAGCAATTTCTGCGTAAAGGGTCCAAAGTCTATATC
GAAGGCCAGCTGCAAACCCGCAAGTGGCAGGACCAGAGCGGTCAGGACCGGTATTCTACCGAAGTGGTGCTGCAAGGCTT
TGGCTCGACGCTCACCATGCTTGATGGTCGCGGCGAAGGTGGTGGCGGCGGTGGCTTTGGCGGTGGTCAAGGCGGCGGCG
ATTACGGTGGCGGCGGTGGCGGCTACGGTGGTGGTGGCAACTACGGCGGCGGCGGTGGCGGCGGCAACCAAGGCGGTGGC
TTTGGTGGCGGTGGCCCCTCGCAAAACATCGACGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1A1D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.977

100

0.52
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.514
  ssb Neisseria meningitidis MC58

40.556

100

0.412
  ssb Neisseria gonorrhoeae MS11

39.459

100

0.412

Multiple sequence alignment