Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AYJ58_RS05775 Genome accession   NZ_CP015194
Coordinates   1304701..1305405 (+) Length   234 a.a.
NCBI ID   WP_006083192.1    Uniprot ID   A0A9X2WXK9
Organism   Shewanella sp. Pdp11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1299701..1310405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ58_RS05765 (AYJ58_05655) uvrA 1299927..1302809 (-) 2883 WP_106649353.1 excinuclease ABC subunit UvrA -
  AYJ58_RS05770 (AYJ58_05660) - 1303224..1304591 (+) 1368 WP_106649354.1 MFS transporter -
  AYJ58_RS05775 (AYJ58_05665) ssb 1304701..1305405 (+) 705 WP_006083192.1 single-stranded DNA-binding protein Machinery gene
  AYJ58_RS05780 (AYJ58_05670) - 1305575..1305841 (+) 267 WP_232790865.1 hypothetical protein -
  AYJ58_RS05785 (AYJ58_05675) - 1306196..1309003 (+) 2808 WP_106651749.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25189.73 Da        Isoelectric Point: 5.2341

>NTDB_id=177389 AYJ58_RS05775 WP_006083192.1 1304701..1305405(+) (ssb) [Shewanella sp. Pdp11]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAAPAPAQQQYGQQQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 705 bp        

>NTDB_id=177389 AYJ58_RS05775 WP_006083192.1 1304701..1305405(+) (ssb) [Shewanella sp. Pdp11]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCAAACATCACAGTAGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACCGGTGAATACCTGCGTAAAGGTTCACAGGTTTACCTTGAA
GGTAAACTGCAAACTCGTAAGTGGAAAGACCAAAGCGGTCAAGACCGTTACAGCACTGAAGTGGTTATCGATCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGGCCAAGCACAAGGCGCGCCAATGGGCGGCGGCATGCCACAAAACG
CAGGTTATCAATCTGCACCACAACAAGCGGCACCAGCGCAAAATCAATATGCGCCAGCCCCTCAAGCTGCACCTGCTTAC
CAAGCGCCAGCTCAGCAACAGTATGCTGCGCCAGCACCTGCTCAGCAGCAATATGGACAGCAACAAGCTCAACCACAACA
AGGTGGTTATGCGCCTAAGCCACAAGCCGCTCCAGCGCCAGCTTATCAAGCGCCAGCTGCGCCGGCACAACGTCCAGCAC
CACAACCACAGCAAAACTTCACGCCAGATTTGGATGATGGCTGGGACGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.571

74.786

0.483
  ssb Glaesserella parasuis strain SC1401

45.022

98.718

0.444
  ssb Neisseria meningitidis MC58

41.558

98.718

0.41
  ssb Neisseria gonorrhoeae MS11

40.693

98.718

0.402

Multiple sequence alignment