Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A4S02_RS12985 Genome accession   NZ_CP015164
Coordinates   2657952..2658509 (-) Length   185 a.a.
NCBI ID   WP_070324019.1    Uniprot ID   A0A1D8QYX4
Organism   Acetobacter ascendens strain LMG 1590     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2652952..2663509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4S02_RS12960 (A4S02_12960) - 2654024..2655064 (-) 1041 WP_012813095.1 IS110 family transposase -
  A4S02_RS15390 - 2655160..2655689 (+) 530 Protein_2516 IS5 family transposase -
  A4S02_RS12975 (A4S02_12975) - 2655718..2656542 (-) 825 WP_082246844.1 IS5-like element IS12528 family transposase -
  A4S02_RS12980 (A4S02_12980) - 2656616..2657890 (-) 1275 WP_070324018.1 O-antigen ligase -
  A4S02_RS12985 (A4S02_12985) ssb 2657952..2658509 (-) 558 WP_070324019.1 single-stranded DNA-binding protein Machinery gene
  A4S02_RS12990 (A4S02_12990) rsmD 2658587..2659171 (-) 585 WP_070324020.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4S02_RS12995 (A4S02_12995) - 2659171..2659947 (-) 777 WP_019088908.1 pseudouridine synthase -
  A4S02_RS13000 (A4S02_13000) - 2659944..2660675 (-) 732 WP_019088907.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  A4S02_RS15885 - 2660799..2660951 (-) 153 WP_003626506.1 hypothetical protein -
  A4S02_RS13005 (A4S02_13005) - 2661173..2661628 (+) 456 WP_070324021.1 nucleoside deaminase -
  A4S02_RS13010 (A4S02_13010) - 2661805..2663373 (+) 1569 WP_070324022.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19780.46 Da        Isoelectric Point: 5.3755

>NTDB_id=177230 A4S02_RS12985 WP_070324019.1 2657952..2658509(-) (ssb) [Acetobacter ascendens strain LMG 1590]
MAGSVNKVILVGNLGKDPEVRSSQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVIIDRFRGELVLLDSRNSGEGEGEGSGGFGGGSSYGGYNSGGGSGYGAPSSAPRQPPAQ
RSGSNNSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=177230 A4S02_RS12985 WP_070324019.1 2657952..2658509(-) (ssb) [Acetobacter ascendens strain LMG 1590]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAGGACCCCGAAGTGCGTTCCAGCCAGAGCGGTGC
AAAGATTGTTTCCTTCTCTCTGGCTACCAGCGACACATGGAATGACCGCGCATCTGGGGAACGACGTGAACGCACAGAGT
GGCATCGCGTGGTCATTTTCAATGAACGTCTGGCTGATGTAGCCGAACGTTTCCTGCGCAAAGGCCGCAAAGTTTATCTG
GAAGGTTCCCTGCAGACCAGAAAATGGACAGATCAGGGCGGTCAGGAACGCTACACGACGGAAGTGATTATTGACCGTTT
CCGTGGTGAGCTGGTGCTGCTGGATAGCCGCAATAGTGGCGAAGGCGAAGGTGAAGGCAGCGGTGGCTTTGGCGGCGGAA
GCAGCTATGGCGGCTATAATAGTGGCGGCGGCAGTGGTTATGGCGCCCCATCATCCGCTCCACGCCAGCCGCCAGCACAG
CGCAGCGGTAGCAATAACTCCGGCGGCTGGGATGCTTCTGGCGGCAACGGAGATCTTGATGACGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8QYX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.396

100

0.492
  ssb Vibrio cholerae strain A1552

44.262

98.919

0.438
  ssb Neisseria gonorrhoeae MS11

38.624

100

0.395
  ssb Neisseria meningitidis MC58

38.462

98.378

0.378

Multiple sequence alignment