Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IEC338SC_RS00985 Genome accession   NZ_CP015145
Coordinates   218571..219158 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain IEC338SC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 213571..224158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS00960 (IEC338SC_0192) - 213641..214447 (-) 807 WP_063097712.1 SDR family NAD(P)-dependent oxidoreductase -
  IEC338SC_RS00965 (IEC338SC_0193) - 214551..214922 (-) 372 WP_063097713.1 MerR family transcriptional regulator -
  IEC338SC_RS00970 (IEC338SC_0194) tenA 214989..215663 (-) 675 WP_057086125.1 thiaminase II -
  IEC338SC_RS00975 (IEC338SC_0195) - 215926..217008 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  IEC338SC_RS00980 (IEC338SC_0196) yajR 217155..218519 (+) 1365 WP_005078603.1 MFS transporter -
  IEC338SC_RS00985 (IEC338SC_0197) ssb 218571..219158 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  IEC338SC_RS00990 (IEC338SC_0198) - 219199..219522 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  IEC338SC_RS00995 (IEC338SC_0199) - 219519..220214 (-) 696 WP_063097714.1 AzlC family ABC transporter permease -
  IEC338SC_RS01000 (IEC338SC_0200) ydcN 220283..220831 (+) 549 WP_063097715.1 helix-turn-helix domain-containing protein -
  IEC338SC_RS01005 (IEC338SC_0201) - 220886..221329 (-) 444 WP_139120927.1 MarR family winged helix-turn-helix transcriptional regulator -
  IEC338SC_RS01010 (IEC338SC_0202) - 221654..222061 (-) 408 WP_063097716.1 EVE domain-containing protein -
  IEC338SC_RS01015 (IEC338SC_0203) - 222066..222518 (-) 453 WP_063097717.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=177077 IEC338SC_RS00985 WP_005066890.1 218571..219158(+) (ssb) [Acinetobacter pittii strain IEC338SC]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=177077 IEC338SC_RS00985 WP_005066890.1 218571..219158(+) (ssb) [Acinetobacter pittii strain IEC338SC]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGTGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCTGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385

Multiple sequence alignment