Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JL2886_RS18950 Genome accession   NZ_CP015124
Coordinates   4026555..4027073 (-) Length   172 a.a.
NCBI ID   WP_065273417.1    Uniprot ID   A0AA92HJ10
Organism   Phaeobacter gallaeciensis strain JL2886     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4021555..4032073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL2886_RS18930 (JL2886_03943) - 4021811..4023373 (-) 1563 WP_065273413.1 hypothetical protein -
  JL2886_RS19635 (JL2886_03944) - 4023363..4023512 (-) 150 WP_197492328.1 hypothetical protein -
  JL2886_RS18935 (JL2886_03945) - 4023594..4024187 (+) 594 WP_065273414.1 shikimate kinase -
  JL2886_RS18940 (JL2886_03946) aroB 4024187..4025314 (+) 1128 WP_065273415.1 3-dehydroquinate synthase -
  JL2886_RS18945 (JL2886_03947) - 4025372..4026451 (-) 1080 WP_065273416.1 site-2 protease family protein -
  JL2886_RS18950 (JL2886_03948) ssb 4026555..4027073 (-) 519 WP_065273417.1 single-stranded DNA-binding protein Machinery gene
  JL2886_RS18955 (JL2886_03949) - 4027472..4027990 (+) 519 WP_420480640.1 lytic transglycosylase domain-containing protein -
  JL2886_RS18960 (JL2886_03950) - 4028154..4028528 (+) 375 WP_065273418.1 hypothetical protein -
  JL2886_RS18965 (JL2886_03951) - 4028661..4029833 (+) 1173 WP_065273834.1 cytochrome-c peroxidase -
  JL2886_RS18970 (JL2886_03952) - 4029887..4031974 (-) 2088 WP_065273419.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18021.64 Da        Isoelectric Point: 5.7840

>NTDB_id=176933 JL2886_RS18950 WP_065273417.1 4026555..4027073(-) (ssb) [Phaeobacter gallaeciensis strain JL2886]
MAGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAVFNEGLVRVCEQYLRKGSKVYI
EGQLQTRKWQDQNGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGGQGGGSYGGGGGYGGGGGGYDSGPQGGGFGGGGQGG
PSHNIDDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=176933 JL2886_RS18950 WP_065273417.1 4026555..4027073(-) (ssb) [Phaeobacter gallaeciensis strain JL2886]
ATGGCCGGCTCAGTCAACAAAGTCATCCTCATCGGCAACCTGGGCCGCGACCCAGAGGTGCGGACCTTTCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATCGCCACCTCTGAAACCTGGAAAGACCGCAACACCGGTGAACGCCGCGAAAAGACCGAAT
GGCACAGCGTTGCCGTCTTCAACGAAGGTCTGGTGCGCGTCTGCGAGCAATACCTGCGCAAGGGCTCCAAGGTCTATATC
GAAGGCCAGCTGCAAACACGCAAATGGCAGGATCAAAACGGTCAGGACCGTTATTCCACCGAAGTCGTCCTGCAGGGCTT
TGGCTCCACCCTGACCATGCTGGATGGCCGCGGTGAAGGCGGCGGTGGCGGCGGCCAGGGTGGCGGCAGCTACGGTGGCG
GCGGCGGATATGGCGGTGGCGGCGGTGGCTACGACAGCGGACCCCAGGGCGGTGGCTTTGGCGGCGGCGGTCAGGGTGGC
CCCTCGCACAATATCGACGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.552
  ssb Vibrio cholerae strain A1552

53.409

100

0.547
  ssb Neisseria meningitidis MC58

42.222

100

0.442
  ssb Neisseria gonorrhoeae MS11

42.222

100

0.442

Multiple sequence alignment