Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   A4U85_RS01600 Genome accession   NZ_CP015121
Coordinates   344708..345526 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain ab736     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339708..350526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4U85_RS19115 - 340290..340420 (-) 131 Protein_297 hypothetical protein -
  A4U85_RS01570 (A4U85_01555) rpoZ 340459..340737 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  A4U85_RS01575 (A4U85_01560) gmk 340810..341439 (-) 630 WP_000015937.1 guanylate kinase -
  A4U85_RS01580 (A4U85_01565) ispH 341562..342512 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  A4U85_RS01585 (A4U85_01570) fimU 342682..343155 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A4U85_RS01590 (A4U85_01575) pilV 343149..343709 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  A4U85_RS01595 (A4U85_01580) pilW 343710..344711 (+) 1002 WP_000079195.1 PilW family protein Machinery gene
  A4U85_RS01600 (A4U85_01585) pilX 344708..345526 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A4U85_RS01605 (A4U85_01590) pilY1 345538..349392 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  A4U85_RS01610 (A4U85_01595) pilY2 349405..349887 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  A4U85_RS01615 (A4U85_01600) pilE 349884..350309 (+) 426 WP_000788344.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=176890 A4U85_RS01600 WP_000149377.1 344708..345526(+) (pilX) [Acinetobacter baumannii strain ab736]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=176890 A4U85_RS01600 WP_000149377.1 344708..345526(+) (pilX) [Acinetobacter baumannii strain ab736]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGAAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment