Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A4W93_RS01445 Genome accession   NZ_CP015118
Coordinates   334355..334855 (+) Length   166 a.a.
NCBI ID   WP_085748918.1    Uniprot ID   A0A1W6L313
Organism   Piscinibacter gummiphilus strain NS21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 329355..339855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W93_RS01425 (A4W93_01405) - 329809..330105 (-) 297 WP_085748914.1 hypothetical protein -
  A4W93_RS01430 (A4W93_01410) recQ 330243..332129 (-) 1887 WP_085748915.1 DNA helicase RecQ -
  A4W93_RS01435 (A4W93_01415) - 332222..333379 (-) 1158 WP_085748916.1 pectinesterase family protein -
  A4W93_RS01440 (A4W93_01420) - 333508..334125 (-) 618 WP_085748917.1 DUF502 domain-containing protein -
  A4W93_RS01445 (A4W93_01425) ssb 334355..334855 (+) 501 WP_085748918.1 single-stranded DNA-binding protein Machinery gene
  A4W93_RS01450 (A4W93_01430) - 334989..336242 (+) 1254 WP_085748919.1 site-specific integrase -
  A4W93_RS01455 (A4W93_01435) - 336226..337761 (+) 1536 WP_085748920.1 site-specific integrase -
  A4W93_RS01460 (A4W93_01440) - 337758..339845 (+) 2088 WP_174694872.1 integrase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17918.92 Da        Isoelectric Point: 5.9796

>NTDB_id=176838 A4W93_RS01445 WP_085748918.1 334355..334855(+) (ssb) [Piscinibacter gummiphilus strain NS21]
MASINKVILIGNLGRDPEVRYTANGAAICNVTIATSRNWKDKNSGDKMEETEWHRVVFYDRLAEIAGEYLKKGRSCYVEG
RLKTRKWQDKDGAEKYTTEIIADNLQLLGGREGGGGGGGDEGGGGGYAPRERSAPAPRPSAAPRQAPAPAPKSSTGFDDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=176838 A4W93_RS01445 WP_085748918.1 334355..334855(+) (ssb) [Piscinibacter gummiphilus strain NS21]
ATGGCGAGCATCAACAAAGTCATCCTCATCGGCAACCTGGGGCGCGACCCCGAGGTCCGTTACACCGCCAACGGCGCCGC
CATCTGCAACGTCACCATCGCCACGTCGCGCAACTGGAAGGACAAGAATTCCGGCGACAAGATGGAAGAGACCGAATGGC
ACCGTGTGGTCTTCTACGACCGCCTGGCAGAGATCGCCGGCGAATACCTCAAGAAGGGCCGCTCGTGCTACGTCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACGGCGCCGAGAAGTACACCACCGAAATCATCGCCGACAACCTCCAGCT
GCTGGGCGGCCGTGAAGGCGGCGGCGGTGGTGGTGGCGACGAAGGCGGCGGTGGCGGCTACGCTCCGCGCGAACGCAGCG
CCCCGGCCCCGCGTCCGTCTGCCGCGCCCCGCCAGGCGCCGGCTCCTGCACCGAAGTCGTCGACCGGGTTCGACGACATG
GACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6L313

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

49.718

100

0.53
  ssb Neisseria gonorrhoeae MS11

50.286

100

0.53
  ssb Vibrio cholerae strain A1552

47.778

100

0.518
  ssb Glaesserella parasuis strain SC1401

45.652

100

0.506

Multiple sequence alignment