Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AMD27_RS14940 Genome accession   NZ_CP015110
Coordinates   3127419..3128006 (-) Length   195 a.a.
NCBI ID   WP_067661973.1    Uniprot ID   A0A143G7D5
Organism   Acinetobacter sp. TGL-Y2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3122419..3133006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS14910 (AMD27_14910) - 3122622..3122903 (-) 282 WP_067661965.1 transposase-like zinc-binding domain-containing protein -
  AMD27_RS14920 (AMD27_14920) - 3123196..3124089 (-) 894 WP_067661967.1 SAM-dependent methyltransferase -
  AMD27_RS14925 (AMD27_14925) - 3124093..3125391 (-) 1299 WP_067661969.1 NAD(P)-binding protein -
  AMD27_RS18295 - 3125937..3126110 (-) 174 Protein_2921 pirin-like C-terminal cupin domain-containing protein -
  AMD27_RS14930 (AMD27_14930) - 3126114..3126431 (+) 318 Protein_2922 LysR substrate-binding domain-containing protein -
  AMD27_RS14935 (AMD27_14935) ahpC 3126572..3127135 (-) 564 WP_067661971.1 alkyl hydroperoxide reductase subunit C -
  AMD27_RS14940 (AMD27_14940) ssb 3127419..3128006 (-) 588 WP_067661973.1 single-stranded DNA-binding protein Machinery gene
  AMD27_RS14945 (AMD27_14945) - 3128058..3129422 (-) 1365 WP_067661975.1 MFS transporter -
  AMD27_RS14950 (AMD27_14950) - 3129572..3130651 (-) 1080 WP_067663065.1 DUF475 domain-containing protein -
  AMD27_RS14955 (AMD27_14955) tenA 3130991..3131659 (+) 669 WP_067661976.1 thiaminase II -
  AMD27_RS14960 (AMD27_14960) - 3131887..3132282 (+) 396 WP_067661977.1 hypothetical protein -
  AMD27_RS14965 (AMD27_14965) - 3132324..3132677 (-) 354 WP_067663068.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21510.42 Da        Isoelectric Point: 7.2010

>NTDB_id=176726 AMD27_RS14940 WP_067661973.1 3127419..3128006(-) (ssb) [Acinetobacter sp. TGL-Y2]
MRGVNKVILVGTLGKDPETKTFQNGGSLTQFSIATSESWTDKSSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSNNRQQTEGSGDSGYNQPRFNNNTNAQPAAGGYGAQQGGYNNAPAAAPQGN
YGNNVNQGFQSPKPQQQPAKPMANAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=176726 AMD27_RS14940 WP_067661973.1 3127419..3128006(-) (ssb) [Acinetobacter sp. TGL-Y2]
ATGCGCGGCGTAAATAAAGTAATCTTAGTTGGTACTCTGGGTAAAGACCCTGAAACAAAAACCTTTCAAAATGGCGGTTC
ATTGACACAGTTTTCAATTGCCACCAGTGAATCTTGGACTGATAAAAGTTCAGGTGAGCGTAAAGAGCAAACTGAATGGC
ACCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATTTGCGTAAAGGATCTAAAGTATATATTGAAGGT
TCACTGCGTACACGTCAGTGGACAGACCAAAGCGGTCAAGAGCGTTACACCACTGAAATCCGTGGCGAACAAATGCAAAT
GTTAGATTCAAACAATCGTCAGCAAACTGAAGGTAGCGGCGATAGCGGTTATAACCAACCGCGTTTTAACAACAATACAA
ATGCTCAGCCAGCGGCGGGCGGTTATGGGGCACAGCAAGGCGGCTATAACAATGCACCAGCGGCTGCACCACAAGGTAAT
TATGGTAACAACGTGAACCAAGGTTTCCAGTCTCCTAAACCACAGCAACAACCTGCCAAACCAATGGCAAATGCACCTGC
TGATTTAGATGATGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143G7D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.759

100

0.528
  ssb Vibrio cholerae strain A1552

44

100

0.451
  ssb Neisseria meningitidis MC58

38.342

98.974

0.379
  ssb Neisseria gonorrhoeae MS11

38.342

98.974

0.379

Multiple sequence alignment