Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SporoP17a_RS09605 Genome accession   NZ_CP015109
Coordinates   1939357..1939878 (-) Length   173 a.a.
NCBI ID   WP_083034451.1    Uniprot ID   A0A2G6BAX5
Organism   Sporosarcina ureae strain P17a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1934357..1944878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP17a_RS09585 (SporoP17a_09500) rplI 1935454..1935900 (-) 447 WP_029054367.1 50S ribosomal protein L9 -
  SporoP17a_RS09590 (SporoP17a_09505) - 1935897..1937873 (-) 1977 WP_156890556.1 DHH family phosphoesterase -
  SporoP17a_RS09595 (SporoP17a_09510) - 1937885..1938823 (-) 939 WP_083034450.1 DUF2232 domain-containing protein -
  SporoP17a_RS09600 (SporoP17a_09515) rpsR 1939075..1939311 (-) 237 WP_029054370.1 30S ribosomal protein S18 -
  SporoP17a_RS09605 (SporoP17a_09520) ssbA 1939357..1939878 (-) 522 WP_083034451.1 single-stranded DNA-binding protein Machinery gene
  SporoP17a_RS09610 (SporoP17a_09525) rpsF 1939927..1940214 (-) 288 WP_083034452.1 30S ribosomal protein S6 -
  SporoP17a_RS09615 (SporoP17a_09530) - 1940532..1940912 (+) 381 WP_237262305.1 DUF3267 domain-containing protein -
  SporoP17a_RS09620 (SporoP17a_09535) ychF 1941107..1942207 (-) 1101 WP_083034453.1 redox-regulated ATPase YchF -
  SporoP17a_RS09625 (SporoP17a_09540) - 1942302..1942499 (-) 198 WP_083034454.1 DUF951 domain-containing protein -
  SporoP17a_RS09630 (SporoP17a_09545) - 1942480..1943418 (-) 939 WP_083034455.1 mechanosensitive ion channel family protein -
  SporoP17a_RS09635 (SporoP17a_09550) yyaC 1943531..1944172 (+) 642 WP_083034456.1 spore protease YyaC -
  SporoP17a_RS09640 (SporoP17a_09555) - 1944083..1944787 (-) 705 WP_083034457.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19039.88 Da        Isoelectric Point: 4.9431

>NTDB_id=176673 SporoP17a_RS09605 WP_083034451.1 1939357..1939878(-) (ssbA) [Sporosarcina ureae strain P17a]
MINRVVLVGRLTKDPELKYTQTGIAVTRFTLAVNRAFANAQGEREADFITCVAWRKQAENIANYLRKGSLAGVDGRIQTG
SFEGQDGKRVYTTEVVADSTQFLEPRSANTERQQSPSYGGGAPSYNAPSQNQGQGYNNQQSYQPNQQNMTRVDNDPFQPG
GGPIEVTDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=176673 SporoP17a_RS09605 WP_083034451.1 1939357..1939878(-) (ssbA) [Sporosarcina ureae strain P17a]
ATGATAAACCGTGTCGTTTTAGTTGGCCGATTAACAAAAGATCCTGAGCTGAAATATACACAGACTGGAATTGCTGTTAC
ACGTTTTACACTGGCAGTGAACCGCGCGTTCGCGAATGCCCAGGGAGAACGGGAAGCGGATTTCATCACGTGTGTAGCTT
GGCGTAAACAGGCTGAGAATATCGCGAATTACTTACGAAAAGGAAGTCTAGCCGGAGTAGATGGTCGTATACAGACGGGC
AGTTTCGAAGGCCAAGACGGTAAGCGTGTTTACACGACAGAAGTTGTTGCGGATAGTACTCAATTCCTGGAACCAAGAAG
TGCTAATACAGAACGTCAGCAATCACCATCGTATGGTGGTGGAGCACCTTCTTATAATGCACCTTCTCAAAACCAAGGAC
AAGGATACAATAACCAGCAATCCTACCAACCGAATCAGCAAAATATGACACGTGTCGATAATGATCCATTCCAGCCAGGC
GGCGGTCCGATTGAAGTAACAGATGACGACTTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G6BAX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.618

100

0.572
  ssb Latilactobacillus sakei subsp. sakei 23K

51.705

100

0.526
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.272

0.37
  ssb Glaesserella parasuis strain SC1401

34.239

100

0.364

Multiple sequence alignment