Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BSL84_RS06410 Genome accession   NZ_CP018870
Coordinates   1412273..1413334 (-) Length   353 a.a.
NCBI ID   WP_030027904.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1407273..1418334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS06390 (BSL84_06390) - 1408089..1408643 (-) 555 WP_037661562.1 adenine phosphoribosyltransferase -
  BSL84_RS06395 (BSL84_06395) secF 1408640..1409701 (-) 1062 WP_075969987.1 protein translocase subunit SecF -
  BSL84_RS06400 (BSL84_06400) secD 1409705..1411486 (-) 1782 WP_045322082.1 protein translocase subunit SecD -
  BSL84_RS06405 (BSL84_06405) yajC 1411640..1412107 (-) 468 WP_030027903.1 preprotein translocase subunit YajC -
  BSL84_RS06410 (BSL84_06410) ruvB 1412273..1413334 (-) 1062 WP_030027904.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BSL84_RS06415 (BSL84_06415) ruvA 1413440..1414063 (-) 624 WP_030027905.1 Holliday junction branch migration protein RuvA -
  BSL84_RS06420 (BSL84_06420) ruvC 1414060..1414590 (-) 531 WP_030027906.1 crossover junction endodeoxyribonuclease RuvC -
  BSL84_RS06425 (BSL84_06425) - 1414801..1415553 (-) 753 WP_030027908.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BSL84_RS06430 (BSL84_06430) pdxT 1415611..1416204 (-) 594 WP_030027909.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  BSL84_RS06435 (BSL84_06435) pdxS 1416212..1417129 (-) 918 WP_030027911.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  BSL84_RS06440 (BSL84_06440) - 1417552..1418094 (-) 543 WP_030034543.1 membrane protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37705.97 Da        Isoelectric Point: 4.8911

>NTDB_id=176502 BSL84_RS06410 WP_030027904.1 1412273..1413334(-) (ruvB) [Streptomyces sp. TN58]
MNWDDESDERLVAAAADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIA
AEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLELPPFT
LVGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVVHRSARLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRDYAQV
RADGVINREVAATALQVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPR
GRVATPAAWAHLGLVAPQHGGGGSTGQQGLFGA

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=176502 BSL84_RS06410 WP_030027904.1 1412273..1413334(-) (ruvB) [Streptomyces sp. TN58]
GTGAACTGGGACGACGAGAGCGACGAGAGGCTCGTGGCGGCCGCCGCCGACGGGGAGGACACCGCCGTCGAGGCGGCCCT
GCGCCCCAAGGACCTCGGAGAGTTCGTCGGCCAGGAGAAGGTCCGCCAGCAGCTGGACCTGGTCCTGAAGGCAGCCAGGC
AGCGCGGGGCCACCGCGGACCACGTCCTGCTGTCCGGCGCGCCGGGACTCGGCAAGACCACCCTCTCCATGATCATCGCG
GCGGAGATGGGGGCCCCCATCCGGATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGACCTCGCAGCCATCCTCTCCTC
CCTTCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGCTGTACATGGCCA
TGGAGGACTTCCGCGTCGACGTGATCGTGGGCAAGGGCCCCGGGGCCACCGCGATCCCGCTGGAGCTGCCGCCCTTCACC
CTGGTCGGCGCCACCACCCGGGCCGGACTGCTGCCCCCGCCGCTGCGCGACCGCTTCGGTTTCACCGGCCACATGGAGTT
CTACGCGCCCGAGGAGCTGGAGCGCGTCGTGCACCGCTCCGCCCGCCTCCTCGACGTGGAGATCGACACCGACGGCGCCG
CCGAGATCGCCGGGCGTTCCCGGGGCACCCCGCGCATCGCCAACCGGCTGCTGCGCCGCGTGCGCGACTACGCCCAGGTC
CGGGCCGACGGTGTGATCAACCGCGAGGTGGCCGCCACCGCCCTCCAGGTGTACGAGGTTGACGCCCGCGGGCTCGACCG
ACTGGATCGCGCCGTTCTGGAGGCCCTTCTGAAGCTGTTCGGCGGCGGGCCCGTCGGGCTGTCGACGCTCGCCGTGGCGG
TGGGCGAGGAGCGGGAGACCGTGGAGGAGGTCGCGGAACCCTTCCTGGTCCGCGAAGGCCTGCTCGCCCGTACCCCCAGG
GGGCGGGTCGCGACCCCTGCGGCATGGGCTCACCTGGGGCTTGTCGCACCTCAGCACGGCGGCGGCGGATCAACGGGACA
ACAGGGCTTGTTCGGGGCCTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(27-185)

RuvB AAA lid domain (AAA_lid_4)

(188-261)

RuvB C-terminal winged helix domain (WHD_RuvB)

(263-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.217

94.051

0.51
  ruvB Streptococcus pneumoniae TIGR4

52.469

91.785

0.482
  ruvB Streptococcus pneumoniae R6

52.469

91.785

0.482
  ruvB Streptococcus pneumoniae D39

52.469

91.785

0.482
  ruvB Synechocystis sp. PCC 6803

51.911

88.952

0.462
  ruvB Helicobacter pylori 26695

48.193

94.051

0.453