Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOC10_RS10250 Genome accession   NZ_CP015018
Coordinates   2052089..2052544 (-) Length   151 a.a.
NCBI ID   WP_011903738.1    Uniprot ID   A4T051
Organism   Polynucleobacter asymbioticus strain Tro8F10W22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2047089..2057544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC10_RS10235 (AOC10_10165) ilvA 2048722..2050242 (+) 1521 WP_071466978.1 threonine ammonia-lyase, biosynthetic -
  AOC10_RS10240 (AOC10_10170) - 2050254..2051171 (+) 918 WP_011903736.1 5'-nucleotidase -
  AOC10_RS10245 (AOC10_10175) queF 2051189..2052016 (+) 828 WP_011903737.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  AOC10_RS10250 (AOC10_10180) ssb 2052089..2052544 (-) 456 WP_011903738.1 single-stranded DNA-binding protein Machinery gene
  AOC10_RS10255 (AOC10_10185) - 2052626..2053810 (-) 1185 WP_011903739.1 MFS transporter -
  AOC10_RS10260 (AOC10_10190) uvrA 2053848..2056736 (+) 2889 WP_011903740.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16260.13 Da        Isoelectric Point: 5.9393

>NTDB_id=176140 AOC10_RS10250 WP_011903738.1 2052089..2052544(-) (ssb) [Polynucleobacter asymbioticus strain Tro8F10W22]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYARSKPAEQSAPSASNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=176140 AOC10_RS10250 WP_011903738.1 2052089..2052544(-) (ssb) [Polynucleobacter asymbioticus strain Tro8F10W22]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTCGGACGTGATCCAGAAACGCGTTACATGCCAAGCGGCGACGC
CGTTACAAATATTTCAGTAGCAACTTCAGACCGCTACAAAGACAAACAAACTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGCGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGTCAGTACCTTAAAAAAGGTTCACAGGTTTATGTTGAAGGT
CGTTTGCGCACCCGAAAATGGACTGACGCTAGTGGTCAAGAAAAATATTCCACTGAGATCGTTGCAGAAACTATGCAAAT
GCTTGGTGGTAAGCCAGTTGGCGGAAGTGGTGATGGTGGCGAAAGCTATGCGCGTTCAAAGCCGGCTGAGCAGTCTGCTC
CATCTGCATCGAATGCTGCATCACTTGGTGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4T051

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536
  ssb Neisseria meningitidis MC58

45.455

100

0.53

Multiple sequence alignment