Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A4F89_RS10780 Genome accession   NZ_CP015016
Coordinates   2148976..2149431 (-) Length   151 a.a.
NCBI ID   WP_011903738.1    Uniprot ID   A4T051
Organism   Polynucleobacter asymbioticus strain MWH-RechtKolB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2143976..2154431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4F89_RS10765 (A4F89_10700) ilvA 2145609..2147129 (+) 1521 WP_071466978.1 threonine ammonia-lyase, biosynthetic -
  A4F89_RS10770 (A4F89_10705) - 2147141..2148058 (+) 918 WP_011903736.1 5'-nucleotidase -
  A4F89_RS10775 (A4F89_10710) queF 2148076..2148903 (+) 828 WP_011903737.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  A4F89_RS10780 (A4F89_10715) ssb 2148976..2149431 (-) 456 WP_011903738.1 single-stranded DNA-binding protein Machinery gene
  A4F89_RS10785 (A4F89_10720) - 2149513..2150697 (-) 1185 WP_071539801.1 MFS transporter -
  A4F89_RS10790 (A4F89_10725) uvrA 2150735..2153623 (+) 2889 WP_071466979.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16260.13 Da        Isoelectric Point: 5.9393

>NTDB_id=176118 A4F89_RS10780 WP_011903738.1 2148976..2149431(-) (ssb) [Polynucleobacter asymbioticus strain MWH-RechtKolB]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYARSKPAEQSAPSASNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=176118 A4F89_RS10780 WP_011903738.1 2148976..2149431(-) (ssb) [Polynucleobacter asymbioticus strain MWH-RechtKolB]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTCGGACGTGATCCAGAAACGCGTTACATGCCAAGCGGCGACGC
CGTTACAAATATTTCAGTAGCAACTTCAGACCGCTACAAAGACAAACAAACTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGCGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGTCAGTACCTTAAAAAAGGTTCACAGGTTTATGTTGAAGGT
CGTTTGCGCACCCGAAAATGGACTGACGCTAGTGGTCAAGAAAAATATTCCACTGAGATCGTTGCAGAAACTATGCAAAT
GCTTGGTGGTAAGCCAGTTGGCGGAAGTGGTGATGGTGGCGAAAGCTATGCGCGTTCAAAGCCGGCTGAGCAGTCTGCTC
CATCTGCATCGAATGCTGCATCACTTGGTGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4T051

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536
  ssb Neisseria meningitidis MC58

45.455

100

0.53

Multiple sequence alignment