Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   A3772_RS17120 Genome accession   NZ_CP015004
Coordinates   3232399..3233043 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SZMC 6179J isolate B23     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3227399..3238043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3772_RS17085 (A3772_17085) mrpB 3228591..3229022 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  A3772_RS17090 (A3772_17090) mrpC 3229022..3229363 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  A3772_RS17095 (A3772_17095) mrpD 3229356..3230837 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  A3772_RS17100 (A3772_17100) mrpE 3230843..3231319 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  A3772_RS17105 (A3772_17105) mrpF 3231319..3231603 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  A3772_RS17110 (A3772_17110) mnhG 3231587..3231961 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  A3772_RS17115 (A3772_17115) yuxO 3232000..3232380 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  A3772_RS17120 (A3772_17120) comA 3232399..3233043 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  A3772_RS17125 (A3772_17125) comP 3233124..3235433 (-) 2310 WP_062826636.1 two-component system sensor histidine kinase ComP Regulator
  A3772_RS17130 (A3772_17130) comX 3235448..3235615 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  A3772_RS17135 (A3772_17135) comQ 3235603..3236502 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  A3772_RS17140 (A3772_17140) degQ 3236687..3236827 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  A3772_RS22850 - 3237049..3237174 (+) 126 WP_003228793.1 hypothetical protein -
  A3772_RS17145 (A3772_17145) - 3237288..3237656 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=176074 A3772_RS17120 WP_003220716.1 3232399..3233043(-) (comA) [Bacillus subtilis strain SZMC 6179J isolate B23]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=176074 A3772_RS17120 WP_003220716.1 3232399..3233043(-) (comA) [Bacillus subtilis strain SZMC 6179J isolate B23]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment