Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   A2I97_RS11770 Genome accession   NZ_CP014990
Coordinates   2439423..2439758 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain KD1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2434423..2444758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I97_RS11750 (A2I97_11385) gcvT 2435033..2436133 (-) 1101 WP_070082107.1 glycine cleavage system aminomethyltransferase GcvT -
  A2I97_RS11755 (A2I97_11390) - 2436557..2438227 (+) 1671 WP_070082108.1 DEAD/DEAH box helicase -
  A2I97_RS11760 (A2I97_11395) - 2438245..2439039 (+) 795 WP_014305407.1 YqhG family protein -
  A2I97_RS11765 (A2I97_11400) sinI 2439216..2439389 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  A2I97_RS11770 (A2I97_11405) sinR 2439423..2439758 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  A2I97_RS11775 (A2I97_11410) tasA 2439806..2440591 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  A2I97_RS11780 (A2I97_11415) sipW 2440655..2441239 (-) 585 WP_012117977.1 signal peptidase I SipW -
  A2I97_RS11785 (A2I97_11420) tapA 2441211..2441882 (-) 672 WP_070082109.1 amyloid fiber anchoring/assembly protein TapA -
  A2I97_RS11790 (A2I97_11425) - 2442141..2442470 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  A2I97_RS11795 (A2I97_11430) - 2442510..2442689 (-) 180 WP_003153093.1 YqzE family protein -
  A2I97_RS11800 (A2I97_11435) comGG 2442746..2443123 (-) 378 WP_070082110.1 competence type IV pilus minor pilin ComGG Machinery gene
  A2I97_RS11805 (A2I97_11440) comGF 2443124..2443519 (-) 396 WP_070082111.1 competence type IV pilus minor pilin ComGF -
  A2I97_RS11810 (A2I97_11445) comGE 2443533..2443847 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  A2I97_RS11815 (A2I97_11450) comGD 2443831..2444268 (-) 438 WP_070082112.1 competence type IV pilus minor pilin ComGD Machinery gene
  A2I97_RS11820 (A2I97_11455) comGC 2444258..2444566 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=175777 A2I97_RS11770 WP_003153104.1 2439423..2439758(+) (sinR) [Bacillus velezensis strain KD1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=175777 A2I97_RS11770 WP_003153104.1 2439423..2439758(+) (sinR) [Bacillus velezensis strain KD1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment