Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BTV18_RS04980 Genome accession   NZ_CP018802
Coordinates   1059813..1061243 (-) Length   476 a.a.
NCBI ID   WP_075293871.1    Uniprot ID   A0A9Q6YYZ2
Organism   Histophilus somni strain USDA-ARS-USMARC-63250     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1054813..1066243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV18_RS04950 (BTV18_04910) infC 1055724..1056266 (+) 543 WP_075293873.1 translation initiation factor IF-3 -
  BTV18_RS04955 (BTV18_04915) rpmI 1056365..1056562 (+) 198 WP_011609029.1 50S ribosomal protein L35 -
  BTV18_RS04960 (BTV18_04920) rplT 1056633..1056986 (+) 354 WP_011609028.1 50S ribosomal protein L20 -
  BTV18_RS04965 (BTV18_04925) - 1057159..1057764 (-) 606 WP_075293872.1 DedA family protein -
  BTV18_RS04970 (BTV18_04930) rplY 1057985..1058272 (+) 288 WP_011609026.1 50S ribosomal protein L25 -
  BTV18_RS09685 - 1058833..1059057 (-) 225 WP_087469221.1 hypothetical protein -
  BTV18_RS04975 (BTV18_04935) - 1059283..1059702 (-) 420 WP_012340506.1 hypothetical protein -
  BTV18_RS04980 (BTV18_04940) sbcB 1059813..1061243 (-) 1431 WP_075293871.1 exodeoxyribonuclease I Machinery gene
  BTV18_RS04985 (BTV18_04945) - 1061286..1064342 (-) 3057 WP_075293870.1 type I restriction endonuclease subunit R -
  BTV18_RS04990 (BTV18_04950) - 1064472..1064996 (-) 525 WP_075293869.1 transposase -
  BTV18_RS09750 - 1065064..1065636 (-) 573 Protein_974 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 55711.37 Da        Isoelectric Point: 5.6753

>NTDB_id=175779 BTV18_RS04980 WP_075293871.1 1059813..1061243(-) (sbcB) [Histophilus somni strain USDA-ARS-USMARC-63250]
MQNDFSFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGITPQICNEKGIPEPEF
AEKVLAEFSQPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSF
RLEKLTQVNDIEHGNAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTS
WVVPLAWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCPILAPAKTLLPENATK
LGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETELYKQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKR
ISDLLFHYRARHFYKTLDRSEQIKWQKYRQRKLEKSAVQFEESLQRLVEEYQNNPEKLLLLQQVYEYGATLLSKLY

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=175779 BTV18_RS04980 WP_075293871.1 1059813..1061243(-) (sbcB) [Histophilus somni strain USDA-ARS-USMARC-63250]
ATGCAAAATGATTTCAGTTTTTTTATCTACGATTACGAAAGTTTTGGGATTAATCCTGCCACTGACAGACCGGCTCAATT
CGCCGGTATTCGTACAGATCAAGATTTTAATATTATTGGCGAGCCTGTAATGTTTTATTGTAAGCAAACCGATGATTATT
TACCGTCGCCGGAATCAGTTTTGGTAACCGGTATTACACCGCAAATTTGTAATGAGAAAGGTATTCCCGAACCGGAATTC
GCAGAGAAAGTTTTAGCTGAATTTAGTCAACCCAACACTTGTATTATGGGGTATAACAATGTCCGTTATGACGATGAGAT
GACACGTTATACCTTTTATCGTAACTTTATTGATCCCTATGAATACAGTTGGAAAAACGGCAATTCTCGCTGGGATTTAA
TAGATGTAGTCCGAGCTTGTTACGCTTTACGTCCGGATGGAATAAATTGGGCTTACGATGATGATGGAATGCCGAGTTTT
CGTTTGGAAAAATTAACACAAGTAAATGATATAGAGCATGGTAATGCTCACGATGCAATGGCTGACGTCTATGCCACGAT
TGCAATGGCAAAATTGATTAAACAAAAACAACCAAAACTTTTTCAATTTTTCTTTGAAAATAGAGGAAAGAGGGAAGTTG
AGAAGTTGATTGATATCGCTAATATGAAACCTTTAGTACATGTATCAGGCATGTTGGGTAATTATCGAGGTAATACCAGC
TGGGTTGTGCCATTAGCTTGGCATCCTATAAATCAGAATGCTGTTATTGTTTGTGATTTAGCAAAGGATATTGATGACTT
ATTGGCTAAAAGTGCGGTCGAATTACGTCAAAATTTGTATACACCAAAAGTTGAATTGGAACAACATAATATTTTACCTG
TACCACTTAAATTAGTGCATATTAATAAATGTCCTATTCTTGCTCCTGCAAAAACATTATTGCCGGAAAATGCAACCAAA
TTGGGAATTGATCGAGAATTCTGTTTGCAAAATTTGCAAAAACTGCGTCAATCTCCAGATATTCGAGATAAGGTCATTGA
AATTTTCCATGATGAAAGAGAAGTAATACACAGTGATAATGTAGAAACTGAATTATATAAGCAATTTTTCAGTAATAATG
ATAAAAACAATATGACGATTTTGCGTCAATTATCTCCGGAGAAATTAAACGAGCATAATTTATCTTTTTCAGATAAACGT
ATCTCGGATTTATTATTTCATTATCGAGCAAGACATTTCTATAAAACGCTTGATCGCTCTGAACAGATAAAATGGCAAAA
ATATCGCCAACGTAAACTAGAAAAAAGTGCGGTTCAATTTGAGGAAAGTTTACAACGTCTAGTAGAAGAGTATCAAAATA
ATCCTGAAAAATTATTGTTGTTACAACAAGTATATGAATATGGAGCAACTTTACTTAGTAAGCTATATTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6YYZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

55.844

97.059

0.542

Multiple sequence alignment