Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AYO71_RS27105 | Genome accession | NZ_CP014947 |
| Coordinates | 6025975..6026496 (-) | Length | 173 a.a. |
| NCBI ID | WP_041477666.1 | Uniprot ID | A0A5E7PLF6 |
| Organism | Pseudomonas koreensis strain D26 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 6020975..6031496
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYO71_RS27075 (AYO71_27075) | - | 6021303..6021884 (+) | 582 | WP_225914461.1 | YjfI family protein | - |
| AYO71_RS27080 (AYO71_27080) | - | 6021902..6022600 (+) | 699 | WP_064361245.1 | PspA/IM30 family protein | - |
| AYO71_RS27085 (AYO71_27085) | - | 6022809..6023459 (+) | 651 | WP_041477669.1 | DUF2491 family protein | - |
| AYO71_RS27090 (AYO71_27090) | - | 6023475..6023900 (+) | 426 | WP_016772952.1 | DUF350 domain-containing protein | - |
| AYO71_RS27095 (AYO71_27095) | - | 6023919..6024617 (+) | 699 | WP_041477668.1 | DUF1190 domain-containing protein | - |
| AYO71_RS27100 (AYO71_27100) | - | 6024619..6025776 (+) | 1158 | WP_041477667.1 | glutathionylspermidine synthase family protein | - |
| AYO71_RS27105 (AYO71_27105) | ssb | 6025975..6026496 (-) | 522 | WP_041477666.1 | single-stranded DNA-binding protein | Machinery gene |
| AYO71_RS27110 (AYO71_27110) | - | 6026506..6027903 (-) | 1398 | WP_041477665.1 | MFS transporter | - |
| AYO71_RS27115 (AYO71_27115) | uvrA | 6028095..6030929 (+) | 2835 | WP_041477664.1 | excinuclease ABC subunit UvrA | - |
| AYO71_RS27120 (AYO71_27120) | bfr | 6030996..6031463 (-) | 468 | WP_016772947.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 19243.38 Da Isoelectric Point: 5.9314
>NTDB_id=175306 AYO71_RS27105 WP_041477666.1 6025975..6026496(-) (ssb) [Pseudomonas koreensis strain D26]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPQAPQQAAPQP
APDFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPQAPQQAAPQP
APDFDSFDDDIPF
Nucleotide
Download Length: 522 bp
>NTDB_id=175306 AYO71_RS27105 WP_041477666.1 6025975..6026496(-) (ssb) [Pseudomonas koreensis strain D26]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGATCAGCAAGGCGGCGGCAACAACTACCAGCAGCAGGCGCCACGTC
AGCAGGCACCGCGCCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCTCCGCAAGCACCGCAGCAGGCCGCACCGCAACCG
GCTCCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGATCAGCAAGGCGGCGGCAACAACTACCAGCAGCAGGCGCCACGTC
AGCAGGCACCGCGCCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCTCCGCAAGCACCGCAGCAGGCCGCACCGCAACCG
GCTCCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.47 |
100 |
0.618 |
| ssb | Glaesserella parasuis strain SC1401 |
48.066 |
100 |
0.503 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.503 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.503 |