Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A3K91_RS12135 Genome accession   NZ_CP014945
Coordinates   2937159..2938214 (-) Length   351 a.a.
NCBI ID   WP_062845501.1    Uniprot ID   -
Organism   Psychrobacter alimentarius strain PAMC 27889     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2932159..2943214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K91_RS12115 (A3K91_2418) pilQ 2932832..2935192 (-) 2361 WP_062845497.1 type IV pilus secretin PilQ -
  A3K91_RS12120 (A3K91_2419) - 2935221..2935754 (-) 534 WP_062845498.1 pilus assembly protein PilP -
  A3K91_RS12125 (A3K91_2420) - 2935754..2936491 (-) 738 WP_062845499.1 type 4a pilus biogenesis protein PilO -
  A3K91_RS12130 (A3K91_2421) - 2936488..2937159 (-) 672 WP_062845500.1 PilN domain-containing protein -
  A3K91_RS12135 (A3K91_2422) comM 2937159..2938214 (-) 1056 WP_062845501.1 type IV pilus assembly protein PilM Machinery gene
  A3K91_RS12140 (A3K91_2423) - 2938408..2941044 (+) 2637 WP_062845502.1 penicillin-binding protein 1A -
  A3K91_RS12145 (A3K91_2424) - 2941131..2941658 (-) 528 WP_062845503.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38247.47 Da        Isoelectric Point: 4.4763

>NTDB_id=175272 A3K91_RS12135 WP_062845501.1 2937159..2938214(-) (comM) [Psychrobacter alimentarius strain PAMC 27889]
MRLFTSKSRHLIGVDICATSVKLVDIQRQQGAFHLKSYGIERLPEGVVVDKLLVDTEAVGHIIATVARRCQVGGSNAATA
VSGSAVITKIIDMDLALSDVEREAQIRLDADQYVPYPLEDVNLDFEVLGPSLISDDMVQVLLAASRSENVDQRVDALTFG
GMQTKVMDIESHAIERAFGLMADSLTNFPELVALVDIGHNQTTLYIAKNGEFIYSREQLFGGVQLTEAIQNRYGLSAEEA
AFSKRERTLPDDYYIEVLTPFIENTIQQITRSLQFYFSSSQYSSIDHIVLAGGSSAIAGLAGMAQQRLGVPVSVANPFTN
MTIAPHIDNEQLAIDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=175272 A3K91_RS12135 WP_062845501.1 2937159..2938214(-) (comM) [Psychrobacter alimentarius strain PAMC 27889]
GTGAGGCTATTTACTTCCAAAAGTCGACATTTGATTGGCGTGGATATTTGTGCCACCTCAGTGAAGTTAGTTGACATACA
GCGTCAACAGGGTGCTTTTCACTTAAAGTCTTATGGTATTGAGAGACTGCCGGAAGGTGTGGTCGTTGATAAACTTTTAG
TAGATACAGAAGCGGTTGGTCATATTATTGCTACTGTCGCTAGGCGTTGTCAAGTTGGGGGTAGCAATGCTGCAACCGCC
GTATCAGGCTCGGCTGTGATTACCAAGATTATTGATATGGATCTCGCGCTAAGCGATGTAGAGCGCGAAGCTCAAATACG
TCTGGATGCCGATCAGTATGTTCCTTATCCATTGGAAGACGTCAATTTGGATTTCGAAGTTTTGGGTCCTTCTTTGATAA
GCGATGACATGGTGCAAGTATTGCTTGCTGCATCTCGTTCAGAAAACGTCGACCAACGCGTTGATGCCCTAACTTTTGGC
GGTATGCAAACCAAGGTGATGGACATCGAGTCTCATGCAATTGAGCGTGCTTTTGGATTAATGGCCGATAGTTTAACAAA
TTTTCCAGAGTTAGTAGCACTGGTAGATATTGGGCACAATCAAACGACCTTATATATCGCCAAAAATGGTGAGTTTATCT
ATAGTCGCGAACAGCTATTTGGTGGTGTTCAACTGACAGAAGCTATACAGAATCGTTATGGTCTGTCGGCTGAGGAAGCG
GCGTTTAGTAAGCGTGAGCGTACTTTGCCTGATGACTACTATATCGAAGTATTGACACCTTTCATTGAAAATACCATTCA
ACAAATCACCCGTTCATTACAATTTTATTTCTCTTCAAGTCAATACAGTAGTATCGATCATATAGTGCTTGCTGGCGGCA
GTAGCGCTATAGCAGGTCTTGCAGGTATGGCTCAACAGAGACTTGGTGTGCCTGTTAGTGTGGCCAATCCATTTACCAAT
ATGACCATTGCACCACATATTGACAATGAGCAATTGGCCATTGATGCACCAAGTTTAATGGCCGCTTGCGGTCTTGCGTT
AAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.997

100

0.51
  pilM Acinetobacter baumannii D1279779

50.427

100

0.504
  comM Acinetobacter baylyi ADP1

47.578

100

0.476
  pilM Legionella pneumophila strain ERS1305867

39.943

100

0.402

Multiple sequence alignment