Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A3K91_RS10940 Genome accession   NZ_CP014945
Coordinates   2665910..2666530 (-) Length   206 a.a.
NCBI ID   WP_062845291.1    Uniprot ID   A0A2A2B430
Organism   Psychrobacter alimentarius strain PAMC 27889     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2660910..2671530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K91_RS10920 (A3K91_2178) - 2661913..2662809 (-) 897 WP_062845287.1 type II secretion system protein N -
  A3K91_RS10925 (A3K91_2179) gspN 2662810..2663634 (-) 825 WP_062845288.1 type II secretion system protein N -
  A3K91_RS10930 (A3K91_2180) - 2663877..2664200 (-) 324 WP_062845289.1 H-NS family nucleoid-associated regulatory protein -
  A3K91_RS10935 (A3K91_2181) - 2664661..2665248 (-) 588 WP_062845290.1 hypothetical protein -
  A3K91_RS10940 (A3K91_2182) ssb 2665910..2666530 (-) 621 WP_062845291.1 single-stranded DNA-binding protein Machinery gene
  A3K91_RS10945 (A3K91_2183) - 2666796..2667437 (-) 642 WP_084387339.1 DUF3833 domain-containing protein -
  A3K91_RS10950 (A3K91_2184) - 2667579..2668943 (-) 1365 WP_062845292.1 MFS transporter -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22444.18 Da        Isoelectric Point: 5.9191

>NTDB_id=175269 A3K91_RS10940 WP_062845291.1 2665910..2666530(-) (ssb) [Psychrobacter alimentarius strain PAMC 27889]
MRGVNKVIIIGNLGADPEARQFSNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGQSGGQDSSNFGGQNQGQGGYGNQGGQSNQNNFGQQANNQQGGYNQAVGAS
QGGQNSFNNQNAPAQQNQFNQPTQQRPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=175269 A3K91_RS10940 WP_062845291.1 2665910..2666530(-) (ssb) [Psychrobacter alimentarius strain PAMC 27889]
ATGCGCGGAGTTAATAAAGTTATCATCATCGGTAACCTTGGAGCAGATCCTGAGGCACGTCAATTTAGTAATGGCGGTAG
CGTAACCAATATTTCGGTTGCGACGTCAGAGCAATGGACAGACAAGCAAAGCGGCGAAAAAAGAGAAGCGACAGAATGGC
ATCGTATCTCACTATTTAATCGTCTGGGCGAAATCGCTGCACAGTATTTGCGTAAAGGTAGTAAAGTCTATATCGAAGGC
AGTTTGCGTACTCGTAAATATCAAGATCCAAATGGTCAAGATCGTTATATTACAGAGATTCGTGCTGAGCAAATGCAAAT
GTTAGATGGTCAGAGTGGCGGTCAAGACAGCAGTAATTTTGGTGGTCAGAACCAAGGGCAAGGTGGTTATGGCAATCAAG
GCGGCCAAAGTAATCAAAATAACTTTGGTCAACAAGCCAATAATCAGCAAGGCGGCTATAATCAAGCAGTTGGGGCGAGC
CAAGGTGGCCAGAATAGCTTTAATAACCAAAATGCGCCTGCTCAGCAAAACCAGTTTAACCAACCGACTCAACAACGTCC
CGCACAGTCGAAGCCTACTGCCATGCCGGATGGTCCTGTAGACGATGACATCCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2B430

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.942

100

0.519
  ssb Vibrio cholerae strain A1552

44.444

100

0.447
  ssb Neisseria meningitidis MC58

39.409

98.544

0.388
  ssb Neisseria gonorrhoeae MS11

39.409

98.544

0.388

Multiple sequence alignment