Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A3Q34_RS12145 Genome accession   NZ_CP014944
Coordinates   2818536..2819219 (+) Length   227 a.a.
NCBI ID   WP_070375599.1    Uniprot ID   A0A7W2TKV2
Organism   Colwellia sp. PAMC 20917     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2813536..2824219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3Q34_RS12125 (A3Q34_12130) - 2813697..2815649 (+) 1953 WP_070375596.1 methyl-accepting chemotaxis protein -
  A3Q34_RS12130 (A3Q34_12135) pssA 2815723..2817051 (+) 1329 WP_070375597.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  A3Q34_RS12135 (A3Q34_12140) - 2817120..2817821 (-) 702 WP_070377138.1 2OG-Fe(II) oxygenase -
  A3Q34_RS12140 (A3Q34_12145) - 2817959..2818357 (+) 399 WP_070375598.1 thioesterase family protein -
  A3Q34_RS12145 (A3Q34_12150) ssb 2818536..2819219 (+) 684 WP_070375599.1 single-stranded DNA-binding protein Machinery gene
  A3Q34_RS12150 (A3Q34_12155) - 2819663..2820553 (+) 891 WP_070375600.1 hypothetical protein -
  A3Q34_RS12155 (A3Q34_12160) - 2820835..2821665 (-) 831 WP_070375601.1 LysR family transcriptional regulator -
  A3Q34_RS12160 (A3Q34_12165) - 2821793..2822986 (+) 1194 WP_070375602.1 acyl-CoA dehydrogenase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24385.66 Da        Isoelectric Point: 5.9149

>NTDB_id=175258 A3Q34_RS12145 WP_070375599.1 2818536..2819219(+) (ssb) [Colwellia sp. PAMC 20917]
MAGVNKVIILGNLGKDPEVRFMPNGGGVANLTIATSETWKDKQTGEQKEKTEWHRVVMFGKLAEIAGEYLKKGSKVYIEG
SLQTRKWANQQGQDQYTTEIVVQGFNGSMQMLDSRGQGSGGQSAGGFSGQASQQQGGFSGQSSQQAPQQAPQQQGGYSQQ
APQQSQQPAYAPAQQQGGFNAPQQQGGYSQQAPQQQGGFANQGQQKQSAPKVNPQEPTIDFDDDIPF

Nucleotide


Download         Length: 684 bp        

>NTDB_id=175258 A3Q34_RS12145 WP_070375599.1 2818536..2819219(+) (ssb) [Colwellia sp. PAMC 20917]
ATGGCCGGTGTTAATAAAGTAATCATTTTAGGTAATTTAGGTAAAGACCCAGAAGTACGTTTTATGCCTAACGGTGGCGG
CGTTGCTAATCTTACTATTGCAACTTCTGAAACCTGGAAAGATAAGCAAACTGGCGAGCAGAAAGAAAAAACAGAATGGC
ATCGTGTTGTTATGTTTGGAAAGTTAGCTGAAATTGCTGGCGAATACCTTAAAAAAGGTTCGAAAGTATATATCGAAGGT
TCATTACAAACGCGTAAGTGGGCAAACCAACAAGGTCAAGATCAGTACACCACTGAAATCGTTGTACAAGGCTTTAATGG
CTCTATGCAAATGCTCGACTCACGTGGTCAAGGTTCTGGCGGTCAGTCAGCTGGTGGTTTCTCTGGTCAAGCTTCGCAGC
AGCAAGGTGGCTTTTCTGGGCAATCTTCACAGCAGGCTCCGCAACAAGCACCACAGCAACAAGGTGGTTACTCTCAGCAA
GCGCCACAACAAAGTCAACAACCTGCTTATGCACCAGCACAGCAACAAGGTGGCTTCAATGCACCACAGCAGCAAGGCGG
TTATTCACAACAAGCACCACAGCAGCAAGGTGGTTTTGCAAATCAAGGACAACAAAAGCAATCAGCTCCTAAAGTTAACC
CTCAAGAGCCAACGATTGATTTTGATGATGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2TKV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.889

99.119

0.524
  ssb Glaesserella parasuis strain SC1401

48.899

100

0.489
  ssb Neisseria gonorrhoeae MS11

39.732

98.678

0.392
  ssb Neisseria meningitidis MC58

39.111

99.119

0.388

Multiple sequence alignment