Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A3Q34_RS04880 Genome accession   NZ_CP014944
Coordinates   1143306..1143833 (-) Length   175 a.a.
NCBI ID   WP_070374336.1    Uniprot ID   -
Organism   Colwellia sp. PAMC 20917     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1138306..1148833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3Q34_RS04860 (A3Q34_04860) - 1138523..1139065 (+) 543 WP_070374332.1 hypothetical protein -
  A3Q34_RS04865 (A3Q34_04865) - 1140858..1141289 (+) 432 WP_070374333.1 hypothetical protein -
  A3Q34_RS04870 (A3Q34_04870) - 1141276..1142238 (+) 963 WP_070374334.1 hypothetical protein -
  A3Q34_RS04875 (A3Q34_04875) - 1142796..1143152 (-) 357 WP_070374335.1 hypothetical protein -
  A3Q34_RS04880 (A3Q34_04880) ssb 1143306..1143833 (-) 528 WP_070374336.1 single-stranded DNA-binding protein Machinery gene
  A3Q34_RS04885 (A3Q34_04885) - 1143858..1144169 (-) 312 WP_070374337.1 hypothetical protein -
  A3Q34_RS04890 (A3Q34_04890) - 1144294..1146585 (-) 2292 WP_070374338.1 helicase C-terminal domain-containing protein -
  A3Q34_RS04895 (A3Q34_04895) - 1146743..1147858 (-) 1116 WP_070374339.1 hypothetical protein -
  A3Q34_RS04900 (A3Q34_04900) cas2 1148131..1148409 (+) 279 WP_070374340.1 CRISPR-associated endonuclease Cas2 -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.72 Da        Isoelectric Point: 9.2130

>NTDB_id=175245 A3Q34_RS04880 WP_070374336.1 1143306..1143833(-) (ssb) [Colwellia sp. PAMC 20917]
MVSKGINKVILIGNLGQPPELKQLANGAAVANLSIATSESWKDKSTGQLREKTEWHRVVLFGYLADIVGKYLTKGSKIYV
EGRLQTRKWQDASGFDRYITEINANQMQMLDSKREENGSQTTYVNTQATVVSGNQSNAPVNKVNTKNTDTRNQTTRTGGT
ITAEPVYDDFDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=175245 A3Q34_RS04880 WP_070374336.1 1143306..1143833(-) (ssb) [Colwellia sp. PAMC 20917]
ATGGTGAGTAAAGGCATTAATAAAGTGATATTGATTGGTAACTTAGGGCAACCACCAGAGCTTAAACAACTTGCTAACGG
TGCTGCTGTAGCAAATTTATCTATTGCAACATCTGAATCGTGGAAAGATAAAAGTACCGGACAATTACGTGAAAAAACGG
AATGGCATCGAGTGGTTTTGTTTGGGTATTTAGCTGACATTGTGGGTAAGTACCTGACGAAAGGTTCAAAAATATATGTT
GAAGGTCGTTTGCAAACACGTAAATGGCAAGACGCAAGTGGTTTTGATCGTTACATAACCGAGATAAACGCCAACCAAAT
GCAAATGCTTGACAGTAAACGTGAAGAAAATGGTAGTCAAACTACATATGTAAATACACAGGCTACTGTTGTGTCAGGTA
ATCAATCGAATGCACCTGTAAATAAAGTTAACACTAAAAATACAGATACACGTAATCAAACAACCCGAACAGGGGGCACG
ATAACGGCAGAGCCTGTTTATGATGACTTTGACGACATACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.315

100

0.491
  ssb Vibrio cholerae strain A1552

47.778

100

0.491
  ssb Neisseria meningitidis MC58

41.379

99.429

0.411
  ssb Neisseria gonorrhoeae MS11

41.379

99.429

0.411

Multiple sequence alignment