Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A3Q33_RS06815 Genome accession   NZ_CP014943
Coordinates   1611214..1611903 (-) Length   229 a.a.
NCBI ID   WP_155866718.1    Uniprot ID   -
Organism   Colwellia sp. PAMC 21821     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1606214..1616903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3Q33_RS06800 (A3Q33_06785) - 1606587..1607603 (-) 1017 WP_081178157.1 IS110 family transposase -
  A3Q33_RS06805 (A3Q33_06790) - 1608120..1609109 (-) 990 WP_081179295.1 mechanosensitive ion channel family protein -
  A3Q33_RS06810 (A3Q33_06795) - 1610025..1610936 (+) 912 WP_081179296.1 formate/nitrite transporter family protein -
  A3Q33_RS06815 (A3Q33_06800) ssb 1611214..1611903 (-) 690 WP_155866718.1 single-stranded DNA-binding protein Machinery gene
  A3Q33_RS06820 (A3Q33_06805) - 1612189..1612581 (-) 393 WP_081179298.1 thioesterase family protein -
  A3Q33_RS06825 (A3Q33_06810) - 1612793..1613491 (+) 699 WP_081179299.1 2OG-Fe(II) oxygenase -
  A3Q33_RS06830 (A3Q33_06815) - 1613710..1614465 (+) 756 WP_081179300.1 transporter substrate-binding domain-containing protein -
  A3Q33_RS06835 (A3Q33_06820) pssA 1614547..1615878 (-) 1332 WP_081179301.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24760.21 Da        Isoelectric Point: 5.9149

>NTDB_id=175227 A3Q33_RS06815 WP_155866718.1 1611214..1611903(-) (ssb) [Colwellia sp. PAMC 21821]
MFMAGVNKVIILGNLGKDPEVRFMPNGGGVANLTIATSESWKDKQTGEQKEKTEWHRVVMFGKLAEIAGEYLKKGSKVYI
EGALQTRKWQNQQGQDQYTTEIVVQGFNGTMQMLDSRGGSGAGAGGFNQQAPQQSGGFQQQAAAPQQSGGYNQQAAPQQA
YNKPAQQSGGFQQPAQQQSAPQQSGGFQQQSAPQQQSGGFQQQQGGFQQNAPKVNPQEPTIDFDDDIPF

Nucleotide


Download         Length: 690 bp        

>NTDB_id=175227 A3Q33_RS06815 WP_155866718.1 1611214..1611903(-) (ssb) [Colwellia sp. PAMC 21821]
TTGTTCATGGCTGGTGTCAATAAAGTAATAATTTTAGGTAACTTAGGGAAAGACCCTGAAGTACGTTTTATGCCTAACGG
TGGTGGGGTAGCTAACCTTACTATTGCAACTTCTGAAAGTTGGAAAGACAAGCAAACGGGTGAACAAAAAGAAAAAACTG
AATGGCACCGTGTAGTCATGTTCGGAAAACTTGCTGAAATCGCCGGTGAATATTTAAAGAAAGGCTCTAAAGTTTATATT
GAAGGTGCTTTGCAAACACGTAAGTGGCAAAACCAGCAAGGCCAAGACCAATATACCACTGAAATTGTAGTTCAAGGTTT
TAACGGCACTATGCAGATGTTAGATTCACGTGGTGGCAGCGGTGCTGGTGCAGGTGGTTTTAATCAACAAGCGCCTCAAC
AATCAGGTGGTTTCCAACAGCAAGCTGCTGCACCACAACAAAGTGGCGGATACAATCAGCAAGCAGCGCCACAACAAGCT
TATAATAAACCTGCTCAACAAAGTGGTGGATTTCAACAACCAGCACAACAGCAGTCAGCTCCACAACAATCGGGTGGTTT
CCAACAACAGTCTGCACCTCAACAACAGTCTGGTGGTTTTCAACAGCAACAAGGTGGCTTTCAACAGAATGCACCGAAAG
TAAACCCTCAAGAACCAACCATTGATTTTGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.113

100

0.546
  ssb Glaesserella parasuis strain SC1401

45.815

99.127

0.454
  ssb Neisseria meningitidis MC58

41.333

98.253

0.406
  ssb Neisseria gonorrhoeae MS11

41.333

98.253

0.406

Multiple sequence alignment