Detailed information NTG0175032

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: BS103_RS13060
• Genome accession: NZ_CP018332
• Coordinates: 2708192..2709196 (+)
• Length: 334 a.a.
• NCBI ID: WP_001154002.1
• Uniprot ID: A3M7W1
• Organism: Acinetobacter baumannii strain A1296
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2703192..2714196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BS103_RS13050 (BS103_13020)	-	2706152..2707492 (+)	1341	WP_000437078.1	deoxyguanosinetriphosphate triphosphohydrolase	-
BS103_RS13055 (BS103_13025)	ruvA	2707584..2708183 (+)	600	WP_000578663.1	Holliday junction branch migration protein RuvA	-
BS103_RS13060 (BS103_13030)	ruvB	2708192..2709196 (+)	1005	WP_001154002.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BS103_RS13065 (BS103_13035)	-	2709401..2710735 (+)	1335	WP_000276831.1	M20 family metallopeptidase	-
BS103_RS13070 (BS103_13040)	ybgC	2710946..2711353 (+)	408	WP_001273591.1	tol-pal system-associated acyl-CoA thioesterase	-
BS103_RS13075 (BS103_13045)	tolQ	2711377..2712075 (+)	699	WP_000224630.1	protein TolQ	-
BS103_RS13080 (BS103_13050)	tolR	2712075..2712527 (+)	453	WP_001007562.1	protein TolR	-
BS103_RS13085 (BS103_13055)	tolA	2712531..2713934 (+)	1404	WP_001039153.1	cell envelope integrity protein TolA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36815.05 Da
• Isoelectric Point: 4.7936

>NTDB_id=175032 BS103_RS13060 WP_001154002.1 2708192..2709196(+) (ruvB) [Acinetobacter baumannii strain A1296]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide

• Length: 1005 bp

>NTDB_id=175032 BS103_RS13060 WP_001154002.1 2708192..2709196(+) (ruvB) [Acinetobacter baumannii strain A1296]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACTTCACTTGCCGA
TTATATCGGGCAACCAGTCGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGTGGTCGTGGTGAAGCACTCGATC
ACACACTGATTTTCGGTCCACCGGGCTTAGGAAAAACCACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCGGGTGATTTGGCTGCAATGCTAACTAACCTTGAAGAAGGCGATGTTTT
ATTTATTGATGAAATTCACCGTCTTTCACCAGTAATTGAAGAAATTCTGTATCCAGCAATGGAAGATTACCAACTCGATA
TCATGATTGGTGAAGGCCCTGCTGCTCGTTCAATTAAACTCGATTTACCACCTTTTACGCTCGTTGCTGCGACCACACGT
GCCGGCTTACTCACCTCGCCCCTACGTGACCGTTTCGGTATTGTGCAACGTCTTGAATTCTATTCTGTAGAAGACCTAAC
TCACATCGTGTCACGATCTGCAAACCTCATGGATGTACCCATTACAGTTGAGGGTGCAGAAGAAGTTGCACGCCGTTCAC
GCGGAACACCGCGTATTGCCAATCGTTTATTACGCCGTGTACGTGACTATGCACAAGTAAAAGGTACAGGCGAAGTTAAC
CATGAAATGGCACAACGTGCGCTTGATATGCTTAATGTCGATAAAGCTGGTTTAGATACCTTAGACCGACGTTATTTAAG
TATGTTGTTAGAACGTTTTGATGGTGGACCTGCTGGTGTTGAAGCCCTTGCAGCTGCTATGGCTGAAGATAGCGGAACAC
TTGAAGATGTTATTGAACCTTATTTAATTCAGCAAGGTTATGTTATGCGTACCGCACGAGGTCGCATTGCAACCAACCAA
TCTTATTTGCAGTTTGGCATGACACCACCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-322)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: A3M7W1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	57.704	99.102	0.572
ruvB	Synechocystis sp. PCC 6803	57.325	94.012	0.539
ruvB	Streptococcus pneumoniae TIGR4	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae R6	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae D39	56.113	95.509	0.536
ruvB	Helicobacter pylori 26695	54.934	91.018	0.5