Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A3218_RS16095 | Genome accession | NZ_CP014867 |
| Coordinates | 3674976..3675488 (+) | Length | 170 a.a. |
| NCBI ID | WP_009045846.1 | Uniprot ID | A0AB33WX86 |
| Organism | Pseudomonas chlororaphis strain 189 isolate 189 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3669976..3680488
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3218_RS16080 (A3218_16080) | bfr | 3670001..3670465 (+) | 465 | WP_007924173.1 | bacterioferritin | - |
| A3218_RS16085 (A3218_16085) | uvrA | 3670557..3673391 (-) | 2835 | WP_007924172.1 | excinuclease ABC subunit UvrA | - |
| A3218_RS16090 (A3218_16090) | - | 3673572..3674966 (+) | 1395 | WP_062824453.1 | MFS transporter | - |
| A3218_RS16095 (A3218_16095) | ssb | 3674976..3675488 (+) | 513 | WP_009045846.1 | single-stranded DNA-binding protein | Machinery gene |
| A3218_RS16100 (A3218_16100) | - | 3675626..3676180 (-) | 555 | WP_062824454.1 | cysteine hydrolase family protein | - |
| A3218_RS16105 (A3218_16105) | - | 3676284..3677291 (+) | 1008 | WP_062824455.1 | GlxA family transcriptional regulator | - |
| A3218_RS16110 (A3218_16110) | - | 3677474..3678583 (+) | 1110 | WP_062824456.1 | DUF3182 family protein | - |
| A3218_RS16115 (A3218_16115) | - | 3678573..3679328 (+) | 756 | WP_062824457.1 | alpha/beta fold hydrolase | - |
| A3218_RS16120 (A3218_16120) | - | 3679412..3680407 (-) | 996 | WP_062824458.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18934.07 Da Isoelectric Point: 5.9455
>NTDB_id=174886 A3218_RS16095 WP_009045846.1 3674976..3675488(+) (ssb) [Pseudomonas chlororaphis strain 189 isolate 189]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=174886 A3218_RS16095 WP_009045846.1 3674976..3675488(+) (ssb) [Pseudomonas chlororaphis strain 189 isolate 189]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGGGTATCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGGGTATCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.427 |
100 |
0.612 |
| ssb | Glaesserella parasuis strain SC1401 |
46.392 |
100 |
0.529 |
| ssb | Neisseria meningitidis MC58 |
48.864 |
100 |
0.506 |
| ssb | Neisseria gonorrhoeae MS11 |
48.295 |
100 |
0.5 |