Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A3L20_RS29175 Genome accession   NZ_CP014847
Coordinates   5763463..5763984 (-) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HD12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5758463..5768984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3L20_RS29155 (A3L20_29155) rplI 5759673..5760119 (-) 447 WP_000864237.1 50S ribosomal protein L9 -
  A3L20_RS29160 (A3L20_29160) - 5760116..5762089 (-) 1974 WP_001113785.1 DHH family phosphoesterase -
  A3L20_RS29165 (A3L20_29165) - 5762168..5763103 (-) 936 WP_000814842.1 YybS family protein -
  A3L20_RS29170 (A3L20_29170) rpsR 5763184..5763417 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  A3L20_RS29175 (A3L20_29175) ssbA 5763463..5763984 (-) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  A3L20_RS29180 (A3L20_29180) rpsF 5764011..5764301 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  A3L20_RS29185 (A3L20_29185) ychF 5764493..5765593 (-) 1101 WP_000524658.1 redox-regulated ATPase YchF -
  A3L20_RS29190 (A3L20_29190) - 5765709..5765906 (-) 198 WP_000435486.1 DUF951 domain-containing protein -
  A3L20_RS29195 (A3L20_29195) - 5765930..5766811 (-) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  A3L20_RS29200 (A3L20_29200) yyaC 5767071..5767667 (+) 597 WP_001020711.1 spore protease YyaC -
  A3L20_RS29205 (A3L20_29205) spo0J 5767688..5768539 (-) 852 WP_001051833.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=174742 A3L20_RS29175 WP_000981963.1 5763463..5763984(-) (ssbA) [Bacillus thuringiensis strain HD12]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=174742 A3L20_RS29175 WP_000981963.1 5763463..5763984(-) (ssbA) [Bacillus thuringiensis strain HD12]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTGTATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment