Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PATSB16_RS16105 Genome accession   NZ_CP014839
Coordinates   3524771..3525259 (-) Length   162 a.a.
NCBI ID   WP_047215079.1    Uniprot ID   A0A522JJX4
Organism   Pandoraea thiooxydans strain ATSB16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3519771..3530259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PATSB16_RS16080 (PATSB16_34340) - 3519858..3520916 (-) 1059 WP_047215076.1 ABC transporter substrate-binding protein -
  PATSB16_RS16085 (PATSB16_34350) - 3520986..3521783 (-) 798 WP_047215077.1 ABC transporter ATP-binding protein -
  PATSB16_RS16090 (PATSB16_34360) - 3521811..3522698 (-) 888 WP_083566820.1 ABC transporter permease -
  PATSB16_RS16095 (PATSB16_34370) - 3522695..3523435 (-) 741 WP_047216667.1 ABC transporter permease -
  PATSB16_RS16100 (PATSB16_34380) - 3523660..3524676 (+) 1017 WP_047215078.1 LacI family DNA-binding transcriptional regulator -
  PATSB16_RS16105 (PATSB16_34390) ssb 3524771..3525259 (-) 489 WP_047215079.1 single-stranded DNA-binding protein Machinery gene
  PATSB16_RS16110 (PATSB16_34400) - 3525292..3526455 (-) 1164 WP_047215080.1 MFS transporter -
  PATSB16_RS16115 (PATSB16_34410) uvrA 3526700..3529564 (+) 2865 WP_047215081.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17123.98 Da        Isoelectric Point: 5.9615

>NTDB_id=174596 PATSB16_RS16105 WP_047215079.1 3524771..3525259(-) (ssb) [Pandoraea thiooxydans strain ATSB16]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKSSGEMKEATEWHRVAFFGRLAEIAGEYLKKGSPVYIEG
RIRTRQWEKDGQKQYTTEIVAEQMQMLGGRGEGGGGGGGGGGYSRESSGGGAPARSAPSRSAPAASKPAGGGFDDMDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=174596 PATSB16_RS16105 WP_047215079.1 3524771..3525259(-) (ssb) [Pandoraea thiooxydans strain ATSB16]
ATGGCATCAGTCAACAAAGTCATTCTGGTCGGCAACCTCGGGGCTGACCCGGAAACCCGCTACATGCCAAGCGGCGACGC
GGTCACCAACATTCGCCTGGCCACCACCGATCGCTACAAGGACAAAAGTAGCGGTGAAATGAAGGAAGCGACCGAATGGC
ACCGCGTGGCGTTCTTCGGGCGCCTGGCGGAAATCGCCGGCGAATACCTGAAGAAGGGCTCGCCGGTCTATATCGAAGGC
CGTATCCGCACCCGCCAGTGGGAAAAGGACGGCCAAAAGCAATACACCACCGAAATCGTCGCCGAGCAAATGCAAATGCT
GGGCGGCCGCGGTGAAGGCGGTGGCGGCGGCGGTGGTGGTGGAGGCTACTCGCGCGAATCGTCGGGCGGCGGCGCGCCGG
CCCGTTCGGCCCCGTCGCGCTCGGCACCGGCCGCATCCAAGCCGGCCGGCGGCGGATTCGACGACATGGACGACGATATT
CCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A522JJX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.829

100

0.568
  ssb Glaesserella parasuis strain SC1401

45.902

100

0.519
  ssb Neisseria meningitidis MC58

47.701

100

0.512
  ssb Neisseria gonorrhoeae MS11

47.701

100

0.512

Multiple sequence alignment