Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   A2G56_RS09360 Genome accession   NZ_CP014835
Coordinates   2042388..2043077 (+) Length   229 a.a.
NCBI ID   WP_062711931.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2037388..2048077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS09335 ktrA 2037757..2038428 (-) 672 WP_099091484.1 potassium uptake transporter gating subunit KtrA -
  A2G56_RS09340 - 2038447..2039820 (-) 1374 WP_062711919.1 TrkH family potassium uptake protein -
  A2G56_RS09345 rsmG 2039845..2040558 (-) 714 WP_062711922.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  A2G56_RS09350 htpX 2040672..2041577 (+) 906 WP_062711925.1 zinc metalloprotease HtpX -
  A2G56_RS09355 - 2041610..2042146 (+) 537 WP_172793806.1 DUF177 domain-containing protein -
  A2G56_RS09360 covR 2042388..2043077 (+) 690 WP_062711931.1 response regulator transcription factor Regulator
  A2G56_RS09365 - 2043121..2044578 (+) 1458 WP_237334411.1 sensor histidine kinase -
  A2G56_RS09370 nrdR 2045286..2045759 (+) 474 WP_062712550.1 transcriptional regulator NrdR -
  A2G56_RS09375 - 2045759..2046931 (+) 1173 WP_062711936.1 DnaD domain protein -
  A2G56_RS09380 dnaI 2046934..2047836 (+) 903 WP_062711939.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26449.29 Da        Isoelectric Point: 4.8734

>NTDB_id=174500 A2G56_RS09360 WP_062711931.1 2042388..2043077(+) (covR) [Streptococcus halotolerans strain HTS9]
MTKHILIIEDEKNLSRFVSLELQHEGYSVTVENNGRAGLETALEKEFDLILLDLMLPEMDGFEVTRRLQQEKSTYIIMMT
ARDSVMDIVSGLDRGADDYIIKPFAIEELLARVRAAFRRQEIEESKRTTSSGASYRDLKLDPQNRSAVRGDETVPLTKRE
FDLLSALMSNMNRVMTREELLNLVWKYDEAVETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=174500 A2G56_RS09360 WP_062711931.1 2042388..2043077(+) (covR) [Streptococcus halotolerans strain HTS9]
ATGACGAAACACATTTTGATTATAGAAGATGAAAAAAATCTTTCACGCTTCGTTTCTTTAGAATTACAACATGAAGGTTA
TTCTGTAACTGTTGAAAACAATGGCCGTGCTGGTTTAGAAACTGCACTTGAAAAAGAATTTGATTTGATTCTTTTGGATT
TGATGCTACCAGAAATGGACGGCTTTGAAGTTACACGTCGTTTGCAGCAAGAAAAATCAACCTATATCATTATGATGACA
GCAAGAGATTCTGTCATGGATATCGTTTCAGGGTTGGATCGTGGTGCAGATGATTATATTATTAAACCATTCGCAATTGA
AGAATTGTTGGCCCGTGTTCGTGCAGCGTTCCGTCGCCAAGAGATCGAAGAAAGCAAGCGAACCACTTCGAGTGGAGCAA
GCTACCGAGATCTTAAATTAGATCCTCAAAATCGTTCAGCTGTCCGTGGTGACGAAACTGTACCGTTGACGAAGCGTGAA
TTTGATCTGTTGTCAGCCTTGATGTCCAATATGAACCGTGTTATGACACGCGAAGAATTATTGAATCTCGTCTGGAAATA
CGATGAAGCTGTTGAAACTAATGTTGTTGACGTGTATATTCGTTACCTCCGTGGCAAAATTGATGTCCCTGGTAAGGAAT
CGTACATTCAAACGGTTCGTGGTATGGGGTATGTCATTCGTGAAAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

81.223

100

0.812
  covR Lactococcus lactis subsp. lactis strain DGCC12653

65.517

100

0.664
  vicR Streptococcus mutans UA159

43.723

100

0.441
  micA Streptococcus pneumoniae Cp1015

43.162

100

0.441

Multiple sequence alignment