Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   B34_RS14690 Genome accession   NZ_CP014793
Coordinates   2788018..2788530 (-) Length   170 a.a.
NCBI ID   WP_080624140.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2783018..2793530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS23810 - 2783412..2783543 (-) 132 WP_229098623.1 hypothetical protein -
  B34_RS14665 (B34_02978) - 2783710..2784186 (+) 477 WP_009330029.1 spore coat protein -
  B34_RS14670 (B34_02979) - 2784229..2784648 (-) 420 WP_003178013.1 universal stress protein -
  B34_RS14675 (B34_02980) - 2784666..2786132 (-) 1467 WP_003178015.1 SulP family inorganic anion transporter -
  B34_RS14680 (B34_02981) - 2786348..2787649 (+) 1302 WP_009330030.1 MFS transporter -
  B34_RS14685 (B34_02982) rpsR 2787727..2787966 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  B34_RS14690 (B34_02983) ssbA 2788018..2788530 (-) 513 WP_080624140.1 single-stranded DNA-binding protein SsbA Machinery gene
  B34_RS14695 (B34_02984) rpsF 2788577..2788864 (-) 288 WP_003178026.1 30S ribosomal protein S6 -
  B34_RS14700 (B34_02985) ychF 2788978..2790078 (-) 1101 WP_003178027.1 redox-regulated ATPase YchF -
  B34_RS14710 (B34_02986) - 2790257..2790463 (-) 207 WP_011201785.1 DUF951 domain-containing protein -
  B34_RS14715 (B34_02987) - 2790551..2791564 (-) 1014 WP_003178030.1 hypothetical protein -
  B34_RS14720 (B34_02988) yyaC 2791868..2792485 (+) 618 WP_003178032.1 spore protease YyaC -
  B34_RS14725 (B34_02989) - 2792522..2793370 (-) 849 WP_075223432.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18382.02 Da        Isoelectric Point: 5.2235

>NTDB_id=174187 B34_RS14690 WP_080624140.1 2788018..2788530(-) (ssbA) [Bacillus licheniformis strain SCDB 34]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENHQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=174187 B34_RS14690 WP_080624140.1 2788018..2788530(-) (ssbA) [Bacillus licheniformis strain SCDB 34]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCTAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCAAATTTCCTTAAAAAAGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCATCAGGGACAGCGTGTATACGTCACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAAAATGAACCGGCTCCAT
TCGGCGGCAGTCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAATGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

83.721

100

0.847
  ssb Latilactobacillus sakei subsp. sakei 23K

58.382

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

34.783

100

0.376

Multiple sequence alignment