Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AXF54_RS03260 Genome accession   NZ_CP014790
Coordinates   666983..667462 (+) Length   159 a.a.
NCBI ID   WP_039194679.1    Uniprot ID   A0A467HC69
Organism   Listeria monocytogenes strain 2015TE24968     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 661983..672462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXF54_RS03210 (AXF54_03210) - 661988..662314 (+) 327 WP_039187936.1 DUF771 domain-containing protein -
  AXF54_RS03215 (AXF54_03215) - 662487..663446 (+) 960 WP_068998183.1 conserved phage C-terminal domain-containing protein -
  AXF54_RS03220 (AXF54_03220) - 663527..663883 (+) 357 WP_039188040.1 phage terminase small subunit-related protein -
  AXF54_RS03225 (AXF54_03225) - 663880..664296 (+) 417 WP_039188042.1 hypothetical protein -
  AXF54_RS15185 - 664293..664469 (+) 177 WP_023552249.1 hypothetical protein -
  AXF54_RS03230 (AXF54_03230) - 664483..665007 (+) 525 WP_039188044.1 hypothetical protein -
  AXF54_RS03235 (AXF54_03235) - 665016..665480 (+) 465 WP_014601512.1 class I SAM-dependent methyltransferase -
  AXF54_RS03240 (AXF54_03240) - 665477..666037 (+) 561 WP_039194685.1 DUF1642 domain-containing protein -
  AXF54_RS03245 (AXF54_03245) - 666096..666497 (+) 402 WP_014601510.1 hypothetical protein -
  AXF54_RS03250 (AXF54_03250) - 666494..666703 (+) 210 WP_039194683.1 DUF7167 family protein -
  AXF54_RS03255 (AXF54_03255) - 666807..666986 (+) 180 WP_039194681.1 hypothetical protein -
  AXF54_RS03260 (AXF54_03260) ssbA 666983..667462 (+) 480 WP_039194679.1 single-stranded DNA-binding protein Machinery gene
  AXF54_RS03265 (AXF54_03265) - 667483..667722 (+) 240 WP_039187812.1 hypothetical protein -
  AXF54_RS03270 (AXF54_03270) - 667728..667898 (+) 171 WP_223196559.1 hypothetical protein -
  AXF54_RS03275 (AXF54_03275) - 667966..668487 (+) 522 WP_223196560.1 sigma factor-like helix-turn-helix DNA-binding protein -
  AXF54_RS03280 (AXF54_03280) - 668484..669026 (+) 543 WP_023552281.1 tyrosine-type recombinase/integrase -
  AXF54_RS03285 (AXF54_03285) - 669042..669380 (+) 339 WP_014930678.1 hypothetical protein -
  AXF54_RS03290 (AXF54_03290) - 669645..669971 (+) 327 WP_039187805.1 hypothetical protein -
  AXF54_RS15325 (AXF54_03295) - 669968..670330 (+) 363 WP_052198696.1 HNH endonuclease signature motif containing protein -
  AXF54_RS03300 (AXF54_03300) - 670425..670952 (+) 528 WP_012951321.1 phage terminase small subunit P27 family -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17470.42 Da        Isoelectric Point: 5.2753

>NTDB_id=174073 AXF54_RS03260 WP_039194679.1 666983..667462(+) (ssbA) [Listeria monocytogenes strain 2015TE24968]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRAFTNQNGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDGDGKRVFVTEVVAESVQFLEPKNNPGRAATNDYQNKANYSNNIQTSSYAADASQKGGAFVNDSKPIDIPDDDLSF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=174073 AXF54_RS03260 WP_039194679.1 666983..667462(+) (ssbA) [Listeria monocytogenes strain 2015TE24968]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGACCCTGAATTACGTTACACTCCAGCAGGCGTAGCAGTCGC
GACTTTTACATTAGCTGTAAACCGCGCTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATAAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCAGGCGTTGATGGACGCGTACAGACTCGT
AATTATGAGGACGGCGACGGTAAACGTGTTTTCGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
CAACCCAGGAAGAGCTGCAACAAATGATTATCAAAACAAAGCTAATTATTCAAACAACATCCAAACAAGCTCATATGCAG
CGGATGCGAGTCAGAAAGGCGGTGCATTTGTTAATGATAGCAAGCCAATCGATATTCCAGATGATGATTTATCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A467HC69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

53.757

100

0.585
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

66.667

0.415
  ssb Neisseria meningitidis MC58

33.333

100

0.365

Multiple sequence alignment