Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BSZ13_RS14765 Genome accession   NZ_CP018206
Coordinates   2832978..2833454 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain MRSN346647     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2827978..2838454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ13_RS14735 (BSZ13_14600) - 2828145..2830661 (+) 2517 WP_072617300.1 hypothetical protein -
  BSZ13_RS14740 (BSZ13_14605) - 2830737..2831192 (+) 456 WP_000581504.1 IrmA family protein -
  BSZ13_RS14745 (BSZ13_14610) - 2831271..2831504 (+) 234 WP_001119729.1 DUF905 family protein -
  BSZ13_RS14755 (BSZ13_14620) - 2831604..2832422 (+) 819 WP_040061766.1 DUF932 domain-containing protein -
  BSZ13_RS14760 (BSZ13_14625) - 2832477..2832962 (+) 486 WP_000849582.1 antirestriction protein -
  BSZ13_RS14765 (BSZ13_14630) radC 2832978..2833454 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  BSZ13_RS14770 (BSZ13_14635) yeeT 2833517..2833738 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  BSZ13_RS14780 (BSZ13_14645) - 2833901..2834269 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BSZ13_RS14785 (BSZ13_14650) cbtA 2834359..2834733 (+) 375 WP_032163901.1 TA system toxin CbtA family protein -
  BSZ13_RS14790 (BSZ13_14655) yeeW 2834730..2834924 (+) 195 WP_000988600.1 DUF5983 family protein -
  BSZ13_RS27695 (BSZ13_14660) - 2834970..2835050 (+) 81 Protein_2667 hypothetical protein -
  BSZ13_RS27215 (BSZ13_14665) - 2835339..2835467 (-) 129 Protein_2668 transposase domain-containing protein -
  BSZ13_RS14800 (BSZ13_14670) - 2835539..2835721 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BSZ13_RS14805 (BSZ13_14675) tmaR 2835822..2836151 (-) 330 WP_000450409.1 DUF496 family protein -
  BSZ13_RS14810 (BSZ13_14680) yeeA 2836323..2837381 (-) 1059 WP_001200891.1 FUSC family protein -
  BSZ13_RS14815 (BSZ13_14685) sbmC 2837579..2838052 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=174073 BSZ13_RS14765 WP_001186726.1 2832978..2833454(+) (radC) [Escherichia coli strain MRSN346647]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=174073 BSZ13_RS14765 WP_001186726.1 2832978..2833454(+) (radC) [Escherichia coli strain MRSN346647]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment