Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   A0T30_RS18790 Genome accession   NZ_CP014784
Coordinates   4069809..4071149 (+) Length   446 a.a.
NCBI ID   WP_061905389.1    Uniprot ID   A0AA42STI2
Organism   Aquipseudomonas alcaligenes strain NEB 585     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4064809..4076149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0T30_RS18765 (A0T30_18765) pgeF 4065009..4065746 (-) 738 WP_061905386.1 peptidoglycan editing factor PgeF -
  A0T30_RS18770 (A0T30_18770) rluD 4065730..4066701 (-) 972 WP_021702235.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A0T30_RS18775 (A0T30_18775) - 4066849..4067871 (+) 1023 WP_021702236.1 outer membrane protein assembly factor BamD -
  A0T30_RS18780 (A0T30_18780) - 4067993..4068217 (+) 225 WP_061905387.1 PP0621 family protein -
  A0T30_RS18785 (A0T30_18785) pilS 4068214..4069806 (+) 1593 WP_061905388.1 PAS domain-containing sensor histidine kinase Regulator
  A0T30_RS18790 (A0T30_18790) pilR 4069809..4071149 (+) 1341 WP_061905389.1 sigma-54 dependent transcriptional regulator Regulator
  A0T30_RS18795 (A0T30_18795) thiO 4071162..4072262 (-) 1101 WP_061905390.1 glycine oxidase ThiO -
  A0T30_RS18800 (A0T30_18800) - 4072314..4072718 (-) 405 WP_061905391.1 type IV pilin protein -
  A0T30_RS20610 - 4072732..4075842 (-) 3111 WP_167629439.1 pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49802.23 Da        Isoelectric Point: 5.4696

>NTDB_id=174040 A0T30_RS18790 WP_061905389.1 4069809..4071149(+) (pilR) [Aquipseudomonas alcaligenes strain NEB 585]
MSTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLELVQHIQQRHAEVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSGETTEGPVDTRLLGESPPMKALRNQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRAEKPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAERFRQDLFYRLNVIELRVPPLRERREDIPLLADT
MLKRLAEGSGLPAARLSLEALDKLKCYRFPGNVRELENMLERAYTLCENDQIQADDLRLADAAPAGESGEASLAQIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=174040 A0T30_RS18790 WP_061905389.1 4069809..4071149(+) (pilR) [Aquipseudomonas alcaligenes strain NEB 585]
ATGAGCACCCGGCAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTCCTGGAGATCACCCTGGGGCGCAT
GAAGCTCGACACTCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTGGCTGGCCCGGGAGCCTTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTCCAGCACATCCAGCAGCGCCATGCCGAAGTACCGGTCGCC
ATGATCACGGCCTACGGCAGCCTGGACACCGCGATCAACGCCCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAGCCGGT
GGACCTCGGCCGCCTGCGCGAGCTGGTCGCCACCGCCCTGCGCCTGCGCAGCGGCGAAACCACGGAGGGACCGGTAGACA
CCCGCCTGCTCGGCGAATCGCCGCCAATGAAGGCGCTGCGCAACCAGATCCAGAAGCTCGCGCGCAGCCAGGCGCCGGTC
TATATCAGCGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAAGGCCCGCGCGCCGAAAAACC
CTTCGTACCGGTCAACTGCGGCGCCATCCCGTCAGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTTA
CCGGCGCGATAGAGGACAAGCAGGGCCTGTTCCAGGCGGCCAATGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTA
CCGCTGGCCATGCAGGTCAAGCTGCTACGCGCCATTCAGGAAAAAGCCGTGCGCGCCGTCGGCGGTCAACAGGAGGTGGT
GGTGGACGTGCGCATCCTCTGCGCAACACACAAGGATCTGGCTGCCGAAGTCGCCGCAGAGCGCTTCCGTCAGGATCTGT
TCTATCGCCTGAACGTCATCGAGCTGCGCGTACCGCCGCTACGCGAGCGCCGTGAGGACATCCCGCTGCTGGCTGACACC
ATGCTCAAACGCCTCGCCGAGGGCAGCGGCCTGCCGGCGGCCCGCCTGAGCCTGGAGGCGCTGGACAAGCTCAAGTGCTA
CCGCTTTCCCGGCAACGTGCGCGAACTGGAGAACATGCTGGAGCGCGCCTACACCCTGTGCGAGAACGACCAGATTCAGG
CCGACGATCTGCGCCTGGCAGATGCAGCACCAGCGGGCGAGAGCGGCGAGGCCTCGCTGGCGCAGATCGACAACCTGGAA
GACTATCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCTCTCGAGGAAACCCGCTGGAACCGCACCGCCGCCGCCCA
GCGCCTCGGCCTGACCTTCCGCTCCATGCGCTACCGCCTGAAGAAGCTGGGCATTGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.739

99.552

0.883
  pilR Acinetobacter baumannii strain A118

50.327

100

0.518
  luxO Vibrio cholerae strain A1552

37.946

100

0.381

Multiple sequence alignment