Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   BSO20_RS18565 Genome accession   NZ_CP018200
Coordinates   3761197..3761892 (+) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3756197..3766892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS18545 (BSO20_18555) - 3757143..3758435 (+) 1293 WP_032873806.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BSO20_RS18550 (BSO20_18560) comC 3758575..3759327 (+) 753 WP_012118107.1 prepilin peptidase Machinery gene
  BSO20_RS18555 (BSO20_18565) - 3759454..3760455 (+) 1002 WP_032873809.1 SPOR domain-containing protein -
  BSO20_RS18560 (BSO20_18570) - 3760596..3761165 (+) 570 WP_032873810.1 Maf family protein -
  BSO20_RS18565 (BSO20_18575) ysxA/radC 3761197..3761892 (+) 696 WP_007408165.1 RadC family protein Machinery gene
  BSO20_RS18570 (BSO20_18580) mreB 3761984..3762997 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BSO20_RS18575 (BSO20_18585) mreC 3763028..3763891 (+) 864 WP_007408166.1 rod shape-determining protein MreC -
  BSO20_RS18580 (BSO20_18590) mreD 3763888..3764406 (+) 519 WP_007408167.1 rod shape-determining protein MreD -
  BSO20_RS18585 (BSO20_18595) minC 3764460..3765140 (+) 681 WP_032873813.1 septum site-determining protein MinC -
  BSO20_RS18590 (BSO20_18600) minD 3765143..3765946 (+) 804 WP_003152655.1 septum site-determining protein MinD -
  BSO20_RS18595 (BSO20_18605) - 3766074..3766877 (+) 804 WP_007408168.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=173940 BSO20_RS18565 WP_007408165.1 3761197..3761892(+) (ysxA/radC) [Bacillus amyloliquefaciens strain WS-8]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=173940 BSO20_RS18565 WP_007408165.1 3761197..3761892(+) (ysxA/radC) [Bacillus amyloliquefaciens strain WS-8]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCCGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGTGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429

Multiple sequence alignment