Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | WM43_RS15100 | Genome accession | NZ_CP014774 |
| Coordinates | 3313907..3314494 (-) | Length | 195 a.a. |
| NCBI ID | WP_005340181.1 | Uniprot ID | A0A165S798 |
| Organism | Aeromonas veronii strain AVNIH1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3276566..3314494 | 3313907..3314494 | within | 0 |
Gene organization within MGE regions
Location: 3276566..3314494
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WM43_RS14940 (WM43_14935) | cspE | 3276566..3276778 (-) | 213 | WP_005316548.1 | RNA chaperone/antiterminator CspA | - |
| WM43_RS14945 (WM43_14940) | yjbD | 3277373..3277657 (-) | 285 | WP_005340165.1 | DUF3811 domain-containing protein | - |
| WM43_RS14950 (WM43_14945) | - | 3277804..3278706 (-) | 903 | WP_005355009.1 | cation diffusion facilitator family transporter | - |
| WM43_RS14955 (WM43_14950) | - | 3279009..3279956 (+) | 948 | WP_012564931.1 | IS30-like element ISAeca1 family transposase | - |
| WM43_RS14960 (WM43_14955) | - | 3280056..3281036 (+) | 981 | WP_000019402.1 | IS5-like element IS5 family transposase | - |
| WM43_RS24305 | - | 3281460..3281585 (+) | 126 | WP_019445191.1 | hypothetical protein | - |
| WM43_RS14965 (WM43_14960) | - | 3281658..3282401 (-) | 744 | WP_064340106.1 | substrate-binding periplasmic protein | - |
| WM43_RS23635 | - | 3282862..3282975 (-) | 114 | Protein_2925 | ISAs1 family transposase | - |
| WM43_RS14970 (WM43_14965) | istB | 3283311..3284066 (-) | 756 | WP_064337870.1 | IS21-like element ISAs29 family helper ATPase IstB | - |
| WM43_RS14975 (WM43_14970) | istA | 3284081..3285622 (-) | 1542 | WP_064337871.1 | IS21-like element ISAs29 family transposase | - |
| WM43_RS14980 (WM43_14975) | - | 3285871..3287208 (+) | 1338 | WP_064339300.1 | DEAD/DEAH box helicase | - |
| WM43_RS14985 (WM43_14980) | - | 3287104..3288240 (-) | 1137 | WP_021141311.1 | ISAs1-like element ISAs12 family transposase | - |
| WM43_RS24105 | - | 3288728..3288988 (-) | 261 | WP_081250417.1 | hypothetical protein | - |
| WM43_RS15000 (WM43_14995) | - | 3289140..3291173 (-) | 2034 | WP_064339303.1 | hypothetical protein | - |
| WM43_RS15005 (WM43_15000) | - | 3291166..3292248 (-) | 1083 | WP_202815779.1 | site-specific integrase | - |
| WM43_RS15020 (WM43_15015) | - | 3294108..3295250 (-) | 1143 | WP_041204923.1 | IS4-like element ISAs18 family transposase | - |
| WM43_RS15025 (WM43_15020) | - | 3295436..3296683 (-) | 1248 | WP_010635909.1 | tyrosine-type recombinase/integrase | - |
| WM43_RS15030 (WM43_15025) | - | 3297201..3298121 (+) | 921 | WP_017780885.1 | DUF4113 domain-containing protein | - |
| WM43_RS15035 (WM43_15030) | - | 3298259..3299290 (+) | 1032 | WP_001809438.1 | IS630-like element ISAhy2 family transposase | - |
| WM43_RS15040 (WM43_15035) | - | 3299390..3299698 (-) | 309 | WP_047440196.1 | helix-turn-helix domain-containing protein | - |
| WM43_RS15045 (WM43_15040) | - | 3299797..3300267 (+) | 471 | WP_017780886.1 | hypothetical protein | - |
| WM43_RS23800 | - | 3302194..3302346 (+) | 153 | WP_158512863.1 | hypothetical protein | - |
| WM43_RS15060 (WM43_15055) | tetR | 3302678..3303313 (-) | 636 | WP_017780888.1 | tetracycline resistance transcriptional repressor TetR | - |
| WM43_RS15065 (WM43_15060) | tet(E) | 3303394..3304611 (+) | 1218 | WP_017780889.1 | tetracycline efflux MFS transporter Tet(E) | - |
| WM43_RS15070 (WM43_15065) | - | 3304699..3305367 (-) | 669 | WP_017780890.1 | hypothetical protein | - |
| WM43_RS24210 | - | 3305526..3305687 (-) | 162 | Protein_2945 | IS5/IS1182 family transposase | - |
| WM43_RS15075 (WM43_15070) | - | 3305905..3308067 (-) | 2163 | WP_059169362.1 | AAA family ATPase | - |
| WM43_RS15080 (WM43_15075) | - | 3308064..3308504 (-) | 441 | WP_017780892.1 | VPA1267 family protein | - |
| WM43_RS23045 | - | 3308501..3308980 (-) | 480 | WP_021140823.1 | hypothetical protein | - |
| WM43_RS15085 (WM43_15080) | - | 3308968..3310845 (-) | 1878 | WP_034524358.1 | integrase | - |
| WM43_RS15090 (WM43_15085) | - | 3310855..3312423 (-) | 1569 | WP_174218922.1 | site-specific integrase | - |
| WM43_RS23050 | - | 3312416..3313741 (-) | 1326 | WP_043147737.1 | site-specific integrase | - |
| WM43_RS15100 (WM43_15095) | ssb | 3313907..3314494 (-) | 588 | WP_005340181.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 21583.11 Da Isoelectric Point: 5.9301
>NTDB_id=173805 WM43_RS15100 WP_005340181.1 3313907..3314494(-) (ssb) [Aeromonas veronii strain AVNIH1]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
Nucleotide
Download Length: 588 bp
>NTDB_id=173805 WM43_RS15100 WP_005340181.1 3313907..3314494(-) (ssb) [Aeromonas veronii strain AVNIH1]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAAGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAGTGGCAAGATCAGAGTGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGATGACGATATCCCGTTCTAG
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAAGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAGTGGCAAGATCAGAGTGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGATGACGATATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
69.347 |
100 |
0.708 |
| ssb | Glaesserella parasuis strain SC1401 |
53.886 |
98.974 |
0.533 |
| ssb | Neisseria meningitidis MC58 |
46.597 |
97.949 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
46.842 |
97.436 |
0.456 |