Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   WM43_RS14325 Genome accession   NZ_CP014774
Coordinates   3145537..3146976 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain AVNIH1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3140537..3151976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM43_RS14295 (WM43_14290) mlaF 3141114..3141914 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  WM43_RS14300 (WM43_14295) - 3142122..3143117 (+) 996 WP_005356672.1 KpsF/GutQ family sugar-phosphate isomerase -
  WM43_RS14305 (WM43_14300) kdsC 3143117..3143671 (+) 555 WP_047438734.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  WM43_RS14310 (WM43_14305) lptC 3143668..3144228 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  WM43_RS14315 (WM43_14310) lptA 3144215..3144742 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  WM43_RS14320 (WM43_14315) lptB 3144746..3145471 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  WM43_RS14325 (WM43_14320) rpoN/rpoN1 3145537..3146976 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  WM43_RS14330 (WM43_14325) hpf 3146997..3147284 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  WM43_RS14335 (WM43_14330) ptsN 3147287..3147733 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  WM43_RS14340 (WM43_14335) rapZ 3147779..3148645 (+) 867 WP_064339242.1 RNase adapter RapZ -
  WM43_RS14345 (WM43_14340) npr 3148666..3148938 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  WM43_RS14350 (WM43_14345) - 3148956..3150860 (-) 1905 WP_064339243.1 BglG family transcription antiterminator -
  WM43_RS14355 (WM43_14350) dagF 3150968..3151708 (-) 741 WP_064339244.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=173801 WM43_RS14325 WP_005336331.1 3145537..3146976(+) (rpoN/rpoN1) [Aeromonas veronii strain AVNIH1]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=173801 WM43_RS14325 WP_005336331.1 3145537..3146976(+) (rpoN/rpoN1) [Aeromonas veronii strain AVNIH1]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCA
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGTGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAAGGAGAGACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATAATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGTGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTTCAGCACTT
CGATCCGGTCGGTATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATTTGATCCAGCTGCTGGAGCCGCGTCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCACGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCCATGGTGCTCAATGACATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491

Multiple sequence alignment