Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A0W33_RS06245 | Genome accession | NZ_CP014766 |
| Coordinates | 1502578..1503063 (+) | Length | 161 a.a. |
| NCBI ID | WP_068837355.1 | Uniprot ID | A0A1I7IL27 |
| Organism | Pontibacter akesuensis strain AKS 1T | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1497578..1508063
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A0W33_RS06225 | - | 1497956..1499560 (-) | 1605 | WP_068837352.1 | Rne/Rng family ribonuclease | - |
| A0W33_RS06230 | - | 1499776..1500639 (-) | 864 | WP_068837353.1 | lipopolysaccharide assembly protein LapB | - |
| A0W33_RS06235 | - | 1500701..1501006 (-) | 306 | WP_025608210.1 | HU family DNA-binding protein | - |
| A0W33_RS06240 | mutY | 1501375..1502466 (+) | 1092 | WP_068837354.1 | A/G-specific adenine glycosylase | - |
| A0W33_RS06245 | ssb | 1502578..1503063 (+) | 486 | WP_068837355.1 | single-stranded DNA-binding protein | Machinery gene |
| A0W33_RS06250 | gldE | 1503090..1504460 (+) | 1371 | WP_068837356.1 | gliding motility-associated protein GldE | - |
| A0W33_RS06255 | gldD | 1504420..1505043 (+) | 624 | WP_082815145.1 | gliding motility lipoprotein GldD | - |
| A0W33_RS06260 | - | 1505071..1505604 (+) | 534 | WP_068837357.1 | Cthe_2314 family HEPN domain-containing protein | - |
| A0W33_RS06265 | - | 1505591..1505827 (+) | 237 | WP_068837358.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17119.69 Da Isoelectric Point: 5.2508
>NTDB_id=173775 A0W33_RS06245 WP_068837355.1 1502578..1503063(+) (ssb) [Pontibacter akesuensis strain AKS 1T]
MASVNKVILIGNLGKDPEVRHLEGGVAVARFPMATSETFKDKQGQRQERTEWHNIVVWRGLAEVAEKYLKKGNSVYIEGR
LRTNNYQDKEGIQRYSTEIVADQMTMLGGPSGGSGNGQESAAASGGNYGSSSASSSGSGNSSNSGGNASAFQNDEPDDLP
F
MASVNKVILIGNLGKDPEVRHLEGGVAVARFPMATSETFKDKQGQRQERTEWHNIVVWRGLAEVAEKYLKKGNSVYIEGR
LRTNNYQDKEGIQRYSTEIVADQMTMLGGPSGGSGNGQESAAASGGNYGSSSASSSGSGNSSNSGGNASAFQNDEPDDLP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=173775 A0W33_RS06245 WP_068837355.1 1502578..1503063(+) (ssb) [Pontibacter akesuensis strain AKS 1T]
ATGGCAAGTGTAAACAAAGTAATCCTGATCGGAAACCTGGGCAAAGACCCGGAAGTACGTCACTTAGAGGGCGGTGTAGC
AGTAGCTCGCTTCCCAATGGCAACCTCCGAAACGTTCAAGGACAAGCAGGGCCAGCGCCAGGAAAGAACCGAATGGCACA
ACATTGTGGTTTGGAGAGGTCTGGCTGAAGTGGCCGAGAAGTACCTGAAGAAAGGCAATTCTGTCTACATCGAAGGAAGA
CTCAGAACCAATAACTATCAGGACAAGGAAGGCATCCAGCGTTACAGCACCGAGATTGTAGCGGACCAGATGACCATGCT
GGGCGGCCCGAGCGGCGGTAGCGGAAACGGCCAGGAATCAGCGGCTGCAAGCGGCGGAAACTACGGCAGTAGCAGCGCAT
CCTCTTCAGGCAGCGGCAATAGCAGCAACAGCGGCGGCAATGCCTCAGCCTTCCAGAACGACGAGCCGGACGACCTGCCG
TTCTAA
ATGGCAAGTGTAAACAAAGTAATCCTGATCGGAAACCTGGGCAAAGACCCGGAAGTACGTCACTTAGAGGGCGGTGTAGC
AGTAGCTCGCTTCCCAATGGCAACCTCCGAAACGTTCAAGGACAAGCAGGGCCAGCGCCAGGAAAGAACCGAATGGCACA
ACATTGTGGTTTGGAGAGGTCTGGCTGAAGTGGCCGAGAAGTACCTGAAGAAAGGCAATTCTGTCTACATCGAAGGAAGA
CTCAGAACCAATAACTATCAGGACAAGGAAGGCATCCAGCGTTACAGCACCGAGATTGTAGCGGACCAGATGACCATGCT
GGGCGGCCCGAGCGGCGGTAGCGGAAACGGCCAGGAATCAGCGGCTGCAAGCGGCGGAAACTACGGCAGTAGCAGCGCAT
CCTCTTCAGGCAGCGGCAATAGCAGCAACAGCGGCGGCAATGCCTCAGCCTTCCAGAACGACGAGCCGGACGACCTGCCG
TTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Neisseria meningitidis MC58 |
46.821 |
100 |
0.503 |
| ssb | Vibrio cholerae strain A1552 |
45.198 |
100 |
0.497 |
| ssb | Neisseria gonorrhoeae MS11 |
46.243 |
100 |
0.497 |
| ssb | Glaesserella parasuis strain SC1401 |
43.889 |
100 |
0.491 |