Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   BSR20_RS08860 Genome accession   NZ_CP018189
Coordinates   1924108..1926138 (-) Length   676 a.a.
NCBI ID   WP_268748945.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1919108..1931138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS08835 (BSR20_08935) - 1920345..1921313 (+) 969 WP_045771648.1 asparaginase -
  BSR20_RS10400 - 1921317..1921460 (+) 144 WP_197090283.1 hypothetical protein -
  BSR20_RS08840 (BSR20_08940) - 1921512..1921724 (-) 213 WP_002884695.1 helix-turn-helix domain-containing protein -
  BSR20_RS08845 (BSR20_08945) - 1921734..1922342 (-) 609 WP_156209957.1 DUF2975 domain-containing protein -
  BSR20_RS08850 (BSR20_08950) - 1922529..1922969 (-) 441 WP_045771650.1 hypothetical protein -
  BSR20_RS08855 (BSR20_08955) - 1923590..1924096 (-) 507 WP_045771651.1 hypothetical protein -
  BSR20_RS08860 (BSR20_08960) recG/mmsA 1924108..1926138 (-) 2031 WP_268748945.1 ATP-dependent DNA helicase RecG Machinery gene
  BSR20_RS08865 (BSR20_08965) alr 1926257..1927360 (-) 1104 WP_045771653.1 alanine racemase -
  BSR20_RS08870 (BSR20_08970) acpS 1927388..1927741 (-) 354 WP_045771654.1 holo-ACP synthase -
  BSR20_RS08875 (BSR20_08975) - 1927747..1928775 (-) 1029 WP_045771655.1 3-deoxy-7-phosphoheptulonate synthase -
  BSR20_RS08880 (BSR20_08980) - 1928860..1929891 (-) 1032 WP_045771656.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 75886.25 Da        Isoelectric Point: 5.8184

>NTDB_id=173775 BSR20_RS08860 WP_268748945.1 1924108..1926138(-) (recG/mmsA) [Streptococcus salivarius strain ICDC3]
MIEDMIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFK
RNRLSFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAI
RAAFDSGALNLLEESLPQVLMDKYRLMGRQEAVRAMHFPKDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAI
AYDEAKIKAKIAELPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTARLQSALMVPTEILAE
QHYQSLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHRLGLVITDEQHRFGVNQRRIFREK
GDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEKDAQVYFISPLIEESEA
LDLKNAVALHQELTDFFGDSATVALMHGRMKNDEKDQIMQDFKDRKSQILVSTTVIEVGVNVPNATVMIIMDADRFGLSQ
LHQLRGRVGRGHKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNIL
EEARRVASQIVSDPNWRENPDWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=173775 BSR20_RS08860 WP_268748945.1 1924108..1926138(-) (recG/mmsA) [Streptococcus salivarius strain ICDC3]
ATGATAGAGGATATGATTCAACTAGATTCACCAATTGCGGATTTGAAAGGTTTTGGTCCTAAGTCCGCTGAAAAATTTAC
CAAATTAGATTTACACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAAGATTTTAAGAGTAAGTCTATCT
TTGAACTGATGGATGGTGAAAAGGCTGTTATTACGGGAACAGTGGTGACACCGGCCAATGTGCAGTATTATGGATTTAAA
CGTAATCGTCTAAGTTTTAAAATCAAGCAAGGAGAGGCAGTGATTGCCATTAGTTTCTTCAACCAGCCTTATCTTGTAGA
CAAGATTGAGATGGGGGCAGAAGTCGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCAGTGACTGGTATGAAAGTGT
TGGCCCAAGTTGAAGACGATATGCAGCCGGTTTACCATGTGGCCCAGGGCGTTAGTCAGGCCCAGCTGATAAAGGCTATA
AGGGCAGCTTTTGATAGTGGGGCCTTGAATTTGTTGGAGGAGAGTCTCCCACAGGTGCTTATGGACAAGTATCGTCTTAT
GGGACGCCAAGAGGCTGTGCGTGCCATGCATTTTCCGAAAGATTTGGCTGAATATAAGCAGGCTCTACGTAGGACCAAGT
TTGAGGAGCTCTTTTATTTCCAGATGAACTTACAGGTGCTGAAGGCTGAGAATAAGTCCGAAACCAATGGTCTAGCAATT
GCTTACGATGAGGCCAAAATCAAAGCCAAAATTGCAGAATTACCATTCCCCTTGACAGAAGCCCAACAGCGCAGTTTATC
GGAAATCCTAGCTGATATGAAATCTGGAGCTCATATGAACCGTCTTTTGCAAGGAGATGTGGGCTCAGGGAAAACAGTTA
TCGCTAGCCTGGCTATGTATGGGGCCTATACGGCAAGATTGCAGTCTGCTCTCATGGTACCGACGGAAATCTTAGCAGAG
CAGCATTATCAGAGTTTGCAGGGGCTTTTTCCTGAGCTAGAGGTAGTGCTCCTAACTTCTGGGATGAAGGCAGCGGACAA
AAAAGTAGCTCTTTCCAAAATCGAATCTGGGGAGGCTCAGATGATCGTGGGGACTCACTCACTGATTCAGGATGCTGTGA
CTTATCACAGGCTTGGCCTAGTAATTACTGATGAGCAACACCGTTTTGGGGTTAATCAACGTCGTATTTTCCGTGAGAAA
GGTGATAATCCTGATGTCCTCATGATGACAGCGACACCTATCCCTAGGACCTTGGCGATTACTGCCTTTGGAGAGATGGA
TGTGTCAATCATTGACCAGATGCCGGCTGGGCGTAAGCCCATTATTACCCGTTGGGTTAAACATGAGCAACTAGATACCG
TACTGACTTGGATTAAGGGCGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCACCTTTGATTGAAGAGTCTGAGGCT
CTCGATTTGAAAAATGCGGTGGCCCTTCATCAGGAACTCACAGATTTCTTTGGGGATTCAGCTACAGTGGCTCTGATGCA
CGGTCGCATGAAAAATGATGAAAAAGACCAAATTATGCAGGACTTCAAGGACAGAAAGTCTCAGATTTTAGTATCAACCA
CAGTTATCGAAGTAGGGGTTAACGTGCCAAATGCTACAGTTATGATCATTATGGATGCCGACCGCTTTGGACTTAGCCAG
CTTCACCAACTTCGAGGACGTGTAGGTCGTGGCCATAAGCAGTCCTACTGTGTTTTGGTGGCTAATCCTAAAAATGATAC
CGGGAAAAAACGCATGCAGGCCATGTGTGAGACTACTGATGGTTTTGTTCTAGCAGAAGAGGACCTTAAGATGCGTGGTT
CAGGAGAGATCTTTGGGACACGTCAGTCAGGAATTCCTGAATTTCAAGTGGCTGATATTGTGGAAGACTACAATATCTTA
GAAGAAGCAAGGCGCGTGGCCAGCCAAATTGTGTCTGACCCTAACTGGCGCGAGAATCCTGATTGGCAGGTGCTTGGAGC
TCATTTGAGAAGCCAAGGCGAGTTTGATTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-162)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(598-671)

Helicase conserved C-terminal domain (Helicase_C)

(463-571)

DEAD/DEAH box helicase (DEAD)

(259-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.535

99.26

0.71
  recG/mmsA Streptococcus pneumoniae R36A

71.535

99.26

0.71
  recG Bacillus subtilis subsp. subtilis str. 168

49.034

99.556

0.488
  recG Neisseria meningitidis strain C311

38.955

99.112

0.386

Multiple sequence alignment