Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   BSR20_RS06115 Genome accession   NZ_CP018189
Coordinates   1364708..1365379 (+) Length   223 a.a.
NCBI ID   WP_004182732.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359708..1370379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS06085 (BSR20_06170) - 1359998..1360267 (-) 270 WP_002884134.1 DUF3165 family protein -
  BSR20_RS06090 (BSR20_06175) typA 1360287..1362137 (-) 1851 WP_002884130.1 translational GTPase TypA -
  BSR20_RS06095 (BSR20_06180) - 1362282..1363250 (-) 969 WP_013990790.1 ROK family glucokinase -
  BSR20_RS06100 (BSR20_06185) - 1363243..1363449 (-) 207 WP_004182729.1 YqgQ family protein -
  BSR20_RS06105 (BSR20_06190) - 1363536..1363988 (-) 453 WP_004182730.1 Fur family transcriptional regulator -
  BSR20_RS06110 (BSR20_06195) - 1364077..1364598 (-) 522 WP_004182731.1 Dps family protein -
  BSR20_RS06115 (BSR20_06200) cclA/cilC 1364708..1365379 (+) 672 WP_004182732.1 prepilin peptidase Machinery gene
  BSR20_RS06120 (BSR20_06205) - 1365397..1366755 (-) 1359 WP_080936855.1 serine hydrolase -
  BSR20_RS06125 (BSR20_06210) sodA 1366854..1367459 (-) 606 WP_004182735.1 superoxide dismutase SodA -
  BSR20_RS06130 (BSR20_06215) holA 1367555..1368589 (-) 1035 WP_014633307.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25811.24 Da        Isoelectric Point: 8.4714

>NTDB_id=173750 BSR20_RS06115 WP_004182732.1 1364708..1365379(+) (cclA/cilC) [Streptococcus salivarius strain ICDC3]
MLSIIYFFLGASLGSFIGLICDRFPEKSIIFPSSHCSHCKHQLRFFEMIPILSQLFLRSRCRSCQTSIPLRYLFMELFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKHKSYPLLIWIVGTLPLLFMGNHYLTFTLGLILAIISYIKRLNIGEGDFL
YLASASLIFPLSKTLLIIEIACLLGLAYFLLRRNLKEYIAFVPFLFLGIVLLTFCSIVIEKSR

Nucleotide


Download         Length: 672 bp        

>NTDB_id=173750 BSR20_RS06115 WP_004182732.1 1364708..1365379(+) (cclA/cilC) [Streptococcus salivarius strain ICDC3]
ATGTTAAGTATTATTTATTTTTTTCTGGGAGCCTCTTTAGGTTCATTTATCGGACTGATTTGTGATCGTTTCCCTGAGAA
GTCGATTATTTTTCCTAGTAGTCACTGTAGTCATTGCAAGCATCAGTTGCGTTTTTTCGAGATGATCCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGATCATGTCAGACTTCTATACCTCTTCGTTACCTCTTTATGGAACTATTTTGTGGA
GTAATATGCCTGCTATATTTCTATGACTTTTTGAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCAAT
TTTTGATTTGAAGCATAAATCCTATCCGCTTCTGATTTGGATAGTTGGAACACTCCCGCTCCTATTCATGGGAAACCACT
ATCTCACTTTTACCTTAGGACTCATATTAGCAATTATATCCTATATTAAACGTTTAAACATTGGAGAAGGCGATTTTCTC
TACTTAGCTAGTGCCTCACTTATTTTCCCACTTTCAAAAACACTACTAATTATTGAAATTGCCTGCCTATTAGGACTAGC
TTACTTCCTTCTACGAAGAAATCTCAAGGAATACATCGCATTTGTTCCATTTCTTTTTCTCGGGATAGTACTCCTTACTT
TTTGTTCAATTGTGATAGAAAAAAGCCGATAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

41.589

95.964

0.399
  cclA/cilC Streptococcus mitis SK321

40.183

98.206

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

41.121

95.964

0.395
  cclA/cilC Streptococcus pneumoniae Rx1

40.654

95.964

0.39
  cclA/cilC Streptococcus pneumoniae D39

40.654

95.964

0.39
  cclA/cilC Streptococcus pneumoniae R6

40.654

95.964

0.39