Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BSR19_RS07625 Genome accession   NZ_CP018187
Coordinates   1694675..1695361 (-) Length   228 a.a.
NCBI ID   WP_156246948.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1689675..1700361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS07595 (BSR19_07710) - 1689840..1690415 (+) 576 WP_022496737.1 CYTH domain-containing protein -
  BSR19_RS07600 (BSR19_07715) - 1690692..1691663 (+) 972 WP_156246944.1 ribose-phosphate diphosphokinase -
  BSR19_RS07605 (BSR19_07720) - 1691667..1692779 (+) 1113 WP_156246946.1 cysteine desulfurase family protein -
  BSR19_RS07610 (BSR19_07725) - 1692781..1693128 (+) 348 WP_002884733.1 DUF1831 domain-containing protein -
  BSR19_RS07615 (BSR19_07730) - 1693270..1693929 (+) 660 WP_002884205.1 redox-sensing transcriptional repressor Rex -
  BSR19_RS07620 (BSR19_07735) - 1693922..1694617 (+) 696 WP_064524131.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  BSR19_RS07625 (BSR19_07740) radC 1694675..1695361 (-) 687 WP_156246948.1 RadC family protein Machinery gene
  BSR19_RS07630 (BSR19_07745) - 1695407..1697050 (-) 1644 WP_155213516.1 rhamnan synthesis F family protein -
  BSR19_RS07635 (BSR19_07750) - 1697051..1698253 (-) 1203 WP_155213515.1 polysaccharide ABC transporter ATP-binding protein -
  BSR19_RS07640 (BSR19_07755) - 1698253..1699059 (-) 807 WP_101799709.1 ABC transporter permease -
  BSR19_RS07645 (BSR19_07760) - 1699060..1699998 (-) 939 WP_155213514.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25776.88 Da        Isoelectric Point: 7.4014

>NTDB_id=173650 BSR19_RS07625 WP_156246948.1 1694675..1695361(-) (radC) [Streptococcus salivarius strain ICDC2]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILKGMTSLADLSRLSLNELQKIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILH
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFDL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=173650 BSR19_RS07625 WP_156246948.1 1694675..1695361(-) (radC) [Streptococcus salivarius strain ICDC2]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGGCTTTTACAAAAGGGAGCAGAGGTTTTATCGGA
TCAGGAGTTGTTGGCGATAGTGCTGCGGACAGGGACTAAGTCTGAGTCGGTTCTATCGATGGCCAATCGTATTTTGAAAG
GGATGACGAGTTTGGCGGATTTGTCTCGTTTGTCCCTGAATGAGCTTCAGAAGATTCCTGGTATTGGGCGTGTGAAGTCT
ATTGAGCTCAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGGCTCGTTCCGAGCAGATTATGTCCAG
TCAGCAGGTGGCCCGTCGTATGATGTTGGATATTGGGGACAAGCCTCAGGAACATCTGGTGGCTATCTATTTGGATACGC
AGAATCGTATTATTCAGCAGAAGACAGTCTTTATTGGTGGGGTCCGTCGTTCGATTGCTGAGCCACGTGAGATTTTACAT
TATGCCTGCCATCTGATGGCAACGTCTTTGATTGTGGTTCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGTAATGA
TATTGATTTTACTCAAAAGATTAAGCGGTCCTGTGATGACTTAGGGATTTGTCTGCTTGATCATCTGATTGTTGGAAAAT
CAACCTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGATCTTTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(105-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.929

98.246

0.579
  radC Streptococcus pneumoniae R6

58.482

98.246

0.575
  radC Streptococcus pneumoniae D39

58.482

98.246

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

58.108

97.368

0.566
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.113

92.982

0.447