Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BSR14_RS09845 Genome accession   NZ_CP018186
Coordinates   2111039..2112040 (-) Length   333 a.a.
NCBI ID   WP_002887068.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2106039..2117040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR14_RS09800 (BSR14_09905) rplP 2106146..2106559 (-) 414 WP_000960950.1 50S ribosomal protein L16 -
  BSR14_RS09805 (BSR14_09910) rpsC 2106563..2107216 (-) 654 WP_002885727.1 30S ribosomal protein S3 -
  BSR14_RS09810 (BSR14_09915) rplV 2107229..2107573 (-) 345 WP_002887063.1 50S ribosomal protein L22 -
  BSR14_RS09815 (BSR14_09920) rpsS 2107589..2107867 (-) 279 WP_000533765.1 30S ribosomal protein S19 -
  BSR14_RS09820 (BSR14_09925) rplB 2107961..2108794 (-) 834 WP_002887065.1 50S ribosomal protein L2 -
  BSR14_RS09825 (BSR14_09930) - 2108812..2109108 (-) 297 WP_002887066.1 50S ribosomal protein L23 -
  BSR14_RS09830 (BSR14_09935) rplD 2109108..2109731 (-) 624 WP_002885795.1 50S ribosomal protein L4 -
  BSR14_RS09835 (BSR14_09940) rplC 2109756..2110382 (-) 627 WP_002885755.1 50S ribosomal protein L3 -
  BSR14_RS09840 (BSR14_09945) rpsJ 2110497..2110805 (-) 309 WP_002885653.1 30S ribosomal protein S10 -
  BSR14_RS09845 (BSR14_09950) ruvB 2111039..2112040 (-) 1002 WP_002887068.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BSR14_RS09850 (BSR14_09955) - 2112175..2113161 (+) 987 WP_156209969.1 IS30 family transposase -
  BSR14_RS09855 (BSR14_09960) - 2113208..2115031 (-) 1824 WP_002892097.1 acyltransferase family protein -
  BSR14_RS09860 (BSR14_09965) - 2115028..2115438 (-) 411 WP_002885750.1 membrane protein -
  BSR14_RS09865 (BSR14_09970) - 2115435..2115869 (-) 435 WP_002885857.1 low molecular weight protein-tyrosine-phosphatase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37583.09 Da        Isoelectric Point: 4.5040

>NTDB_id=173571 BSR14_RS09845 WP_002887068.1 2111039..2112040(-) (ruvB) [Streptococcus salivarius strain ICDC1]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTQES

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=173571 BSR14_RS09845 WP_002887068.1 2111039..2112040(-) (ruvB) [Streptococcus salivarius strain ICDC1]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTCCGTCCACAGTACTTTAAGGA
ATACATTGGTCAAGATAAGGTTAAAGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCCCTAGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTGGGGAAAACAACTATGGCTTTTGTGATAGCTAATGAGATGGGCGTCAATTTA
AAGCAGACGTCTGGGCCAGCAATTGAAAAGGCTGGTGATTTAGTTGCTATACTCAATGACTTGGAGCCAGGTGATATCTT
ATTTATTGATGAGATTCACCGGATGCCTATGGCAGTTGAAGAAGTTCTTTATAGTGCTATGGAAGATTACTACATCGATA
TCATGATTGGTGCAGGCGAAACAAGTCGTAGTGTCCATCTAGAGTTACCACCGTTCACATTAGTAGGTGCAACTACTCGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGCTTTGGGATTAATGGTCATATGGAATATTATGAGCTACCAGATTTGAA
GGAAATTATTGAACGTACTTCAGAAATCTTTGACATGACTATAACACCTGAAGCTGCTCTAGAGCTAGCACGTCGTAGCC
GTGGGACGCCTCGTATTGCTAACCGCCTACTTAAGCGCGTGAGAGACTATGCACAAATCATGGGTGATGGCATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGACCATGAAGGACTAGATTATGTCGATCAAAAAATTCTTCG
AACTATGATTGAAATGTATGGTGGGGGACCGGTTGGTCTAGGTACCTTGTCGGTTAATATTGCTGAAGAGCGAGAAACGG
TAGAAGATATGTATGAACCCTACCTAATTCAAAAAGGATTCATTATGCGTACACGTACAGGACGCGTTGCAACGGTTAAA
GCCTATGAACACATGGGGTACGACTACACTCAAGAAAGTTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

86.747

99.7

0.865
  ruvB Streptococcus pneumoniae R6

86.446

99.7

0.862
  ruvB Streptococcus pneumoniae D39

86.446

99.7

0.862
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.204

96.997

0.565
  ruvB Synechocystis sp. PCC 6803

51.118

93.994

0.48
  ruvB Helicobacter pylori 26695

49.844

96.396

0.48