Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   BSR14_RS01820 Genome accession   NZ_CP018186
Coordinates   339807..340469 (+) Length   220 a.a.
NCBI ID   WP_156209456.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334807..345469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR14_RS01795 (BSR14_01785) - 335115..335825 (+) 711 WP_013990087.1 ABC transporter ATP-binding protein -
  BSR14_RS01800 (BSR14_01790) - 335960..336619 (+) 660 WP_070849374.1 CBS and ACT domain-containing protein -
  BSR14_RS01805 (BSR14_01795) cysK 336798..337724 (-) 927 WP_070849377.1 cysteine synthase A -
  BSR14_RS01810 (BSR14_01800) - 337826..338452 (-) 627 WP_070849380.1 YigZ family protein -
  BSR14_RS01815 (BSR14_01805) comFA/cflA 338507..339826 (+) 1320 WP_084871141.1 DEAD/DEAH box helicase Machinery gene
  BSR14_RS01820 (BSR14_01810) comFC/cflB 339807..340469 (+) 663 WP_156209456.1 ComF family protein Machinery gene
  BSR14_RS01825 (BSR14_01815) hpf 340548..341096 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26130.39 Da        Isoelectric Point: 8.6884

>NTDB_id=173485 BSR14_RS01820 WP_156209456.1 339807..340469(+) (comFC/cflB) [Streptococcus salivarius strain ICDC1]
MKCLLCNDWIESVPKLRDLITFNQREEYSCLSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYHYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNKLKPFLTKGFTIVPVPLSEERLAERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTRKERLSQDNAFYLKKGIDVPDKIIIVDDIYTTGSTLYQMVQLLEGIDIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=173485 BSR14_RS01820 WP_156209456.1 339807..340469(+) (comFC/cflB) [Streptococcus salivarius strain ICDC1]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCTTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCACTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAAGTTAAAACCATTTTTGACGAAAGGTTTTACCATAGTGCCGGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TTAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGCAAGGAGCGTTTAAGTCAAGATAATGCCTTCTATCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCTACTTTATATCAGATGGTTCAACTATTAGAAGGTATAGATATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae D39

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae R6

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae TIGR4

44.144

100

0.445