Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   BSR14_RS00330 Genome accession   NZ_CP018186
Coordinates   56879..57469 (+) Length   196 a.a.
NCBI ID   WP_014633718.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 51879..62469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR14_RS00305 (BSR14_00305) - 53010..53465 (-) 456 WP_049527571.1 DUF3021 domain-containing protein -
  BSR14_RS00310 (BSR14_00310) - 53462..53899 (-) 438 WP_045772361.1 LytTR family DNA-binding domain-containing protein -
  BSR14_RS00315 (BSR14_00315) - 54078..54383 (+) 306 WP_002886319.1 hypothetical protein -
  BSR14_RS00320 (BSR14_00320) hexB 54433..56370 (+) 1938 WP_021143432.1 DNA mismatch repair endonuclease MutL Machinery gene
  BSR14_RS00325 (BSR14_00325) - 56501..56722 (+) 222 WP_002886321.1 hypothetical protein -
  BSR14_RS00330 (BSR14_00330) ruvA 56879..57469 (+) 591 WP_014633718.1 Holliday junction branch migration protein RuvA Machinery gene
  BSR14_RS00335 (BSR14_00335) - 57478..58032 (+) 555 WP_014633717.1 DNA-3-methyladenine glycosylase I -
  BSR14_RS00340 (BSR14_00340) cinA 58129..59397 (+) 1269 WP_045772364.1 competence/damage-inducible protein A Machinery gene
  BSR14_RS00345 (BSR14_00345) recA 59433..60572 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  BSR14_RS00350 (BSR14_00350) - 60703..61689 (+) 987 WP_002886406.1 IS30 family transposase -
  BSR14_RS00355 (BSR14_00355) spx 61827..62225 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21724.13 Da        Isoelectric Point: 5.3091

>NTDB_id=173467 BSR14_RS00330 WP_014633718.1 56879..57469(+) (ruvA) [Streptococcus salivarius strain ICDC1]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNYQLDEAMEALL
ALGYKAAELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=173467 BSR14_RS00330 WP_014633718.1 56879..57469(+) (ruvA) [Streptococcus salivarius strain ICDC1]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAGGTTATTAGAG
ATGATGCCCACCTTCTTTTTGGTTTTCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCTCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTGGCTGCCGTTGATAATAGTGACATCAA
ATACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAACAAATGGTTCTGGACTTGGCAGGGAAATTTGCAGAGC
TACCAACAGAAACGACCAAGACGACACCAAGTCAACCTGAAGGGAATTATCAATTGGATGAGGCTATGGAAGCCTTGCTT
GCTCTTGGTTATAAAGCCGCAGAACTTAAGAAAATCAAAGCCTTCTTCGAAGGTACTAATGAAACGGCAGAGCAATACAT
TAAATCAGCTCTTAAGATGTTGATGAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423