Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | A0U95_RS20950 | Genome accession | NZ_CP014693 |
| Coordinates | 4814043..4814912 (-) | Length | 289 a.a. |
| NCBI ID | WP_003205672.1 | Uniprot ID | A0AAD1GUZ5 |
| Organism | Pseudomonas brassicacearum strain L13-6-12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4809043..4819912
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A0U95_RS20910 (A0U95_20870) | - | 4809120..4809647 (-) | 528 | WP_003205684.1 | MOSC domain-containing protein | - |
| A0U95_RS20915 (A0U95_20875) | - | 4809644..4810270 (-) | 627 | WP_003205682.1 | DUF1780 domain-containing protein | - |
| A0U95_RS20920 (A0U95_20880) | - | 4810759..4811586 (-) | 828 | WP_233839806.1 | LysR substrate-binding domain-containing protein | - |
| A0U95_RS20925 (A0U95_20885) | - | 4811803..4812213 (+) | 411 | WP_003205679.1 | tautomerase family protein | - |
| A0U95_RS20930 (A0U95_20890) | - | 4812255..4812941 (+) | 687 | WP_069971383.1 | energy-coupling factor ABC transporter permease | - |
| A0U95_RS20935 (A0U95_20895) | - | 4813005..4813220 (+) | 216 | WP_013694234.1 | hypothetical protein | - |
| A0U95_RS20940 (A0U95_20900) | yacG | 4813217..4813423 (-) | 207 | WP_003205675.1 | DNA gyrase inhibitor YacG | - |
| A0U95_RS20945 (A0U95_20905) | coaE | 4813420..4814043 (-) | 624 | WP_003205673.1 | dephospho-CoA kinase | - |
| A0U95_RS20950 (A0U95_20910) | pilD | 4814043..4814912 (-) | 870 | WP_003205672.1 | prepilin peptidase | Machinery gene |
| A0U95_RS20955 (A0U95_20915) | pilC | 4814914..4816131 (-) | 1218 | WP_069971384.1 | type II secretion system F family protein | Machinery gene |
| A0U95_RS20960 (A0U95_20920) | pilB | 4816134..4817834 (-) | 1701 | WP_003205669.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| A0U95_RS20965 (A0U95_20925) | - | 4818059..4818490 (+) | 432 | WP_069971385.1 | pilin | - |
| A0U95_RS20970 (A0U95_20930) | - | 4818820..4819173 (+) | 354 | WP_013694229.1 | BON domain-containing protein | - |
| A0U95_RS20975 (A0U95_20935) | - | 4819502..4819798 (-) | 297 | WP_013694228.1 | DUF2845 domain-containing protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31941.12 Da Isoelectric Point: 8.0578
>NTDB_id=173302 A0U95_RS20950 WP_003205672.1 4814043..4814912(-) (pilD) [Pseudomonas brassicacearum strain L13-6-12]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
PWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
PWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=173302 A0U95_RS20950 WP_003205672.1 4814043..4814912(-) (pilD) [Pseudomonas brassicacearum strain L13-6-12]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGCTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGGTCGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGCTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGGTCGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.817 |
98.27 |
0.519 |
| pilD | Vibrio campbellii strain DS40M4 |
51.228 |
98.616 |
0.505 |
| pilD | Acinetobacter baumannii D1279779 |
48.754 |
97.232 |
0.474 |
| pilD | Acinetobacter nosocomialis M2 |
48.754 |
97.232 |
0.474 |
| pilD | Neisseria gonorrhoeae MS11 |
47.038 |
99.308 |
0.467 |